@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1622: (2016-03-26 )
LKKITPKAMCAWIPKREDETHKGDYGRVLIVAGNKQFGGAAIMAAEACVKSGAGLTTVASDSVNRPALQTRIPECMFIDYENITSLSEQISQFDTILIGPGLGLDAYAEEIFRLVLQKSTEHQQVIIDGDGITIYAKGENPHPAAKLTFTPHAGEWERLKVLAPDAVTPTDVALAIDATIVLKGHRTKVYSGESAWQNMYGTPAMATGGMGDTLAGTICGLMAQTEKPITGTLAAVFLHSYIGEILAKKRYVVLPTEIAEELPTYLKIFSETDEHA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_13(2RBC)
?
[Raw transfer]




ATP_A_6(3RTG)
NNR_THEMA
[Raw transfer]




ATP_A_6(3RTC)
NNR_THEMA
[Raw transfer]




APR_A_6(3RS8)
NNR_THEMA
[Raw transfer]




ADP_A_6(3RTD)
NNR_THEMA
[Raw transfer]




AMP_A_3(3RPZ)
NNRD_BACSU
[Raw transfer]




EDO_A_9(2R3B)
NNRD_ENTFA
[Raw transfer]




EDO_A_9(2R3B)
NNRD_ENTFA
[Raw transfer]




22 HHSearch 99.2944%-102 * C2 *2R3B 2.2 NNRD_ENTFA
2 PsiBlast_PDB 94.1844%-105 - C2 -2R3E - NNRD_ENTFA -
21 HHSearch 93.2943%-101 - C2 -3BGK - ? -
1 PsiBlast_PDB 92.8644%-100 - C2 -2R3B 2.2 NNRD_ENTFA
3 PsiBlast_PDB 91.5444% -92 - C2 -3BGK - ? -
18 PsiBlast_PDB 78.7428%-101 - C2 -3RRB - NNR_THEMA -
9 PsiBlast_PDB 78.7028%-100 - C2 -3RSS - NNR_THEMA -
4 PsiBlast_PDB 78.4528% -97 - C2 -2AX3 - NNR_THEMA -
15 PsiBlast_PDB 78.3028%-100 - C2 -3RTE - NNR_THEMA -
17 PsiBlast_PDB 78.2228%-100 - C2 -3RU3 - NNR_THEMA -
8 PsiBlast_PDB 78.2028%-100 - C2 -3RSQ - NNR_THEMA -
7 PsiBlast_PDB 78.1028%-100 - C2 -3RSF - NNR_THEMA -
12 PsiBlast_PDB 77.7928%-101 - C2 -3RTA - NNR_THEMA -
11 PsiBlast_PDB 77.6828% -98 - C2 -3RT9 - NNR_THEMA -
10 PsiBlast_PDB 77.6428% -98 - C2 -3RT7 - NNR_THEMA -
16 PsiBlast_PDB 77.5828% -99 - C2 -3RTG 6.3 NNR_THEMA
13 PsiBlast_PDB 77.5628%-101 - C2 -3RTC 5.8 NNR_THEMA
6 PsiBlast_PDB 77.3128%-100 - C2 -3RS9 - NNR_THEMA -
14 PsiBlast_PDB 77.2828% -99 - C2 -3RTD 6.8 NNR_THEMA
5 PsiBlast_PDB 77.1828% -98 - C2 -3RS8 7.3 NNR_THEMA