@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1759: (2016-03-28 )
LNAKELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIAYLVRERGVNPYNILAITFTNKAAREMKSRIGNLMGGEAESIWISTFHSMCVRILRRDIDRIGYERNFTILDGSDQLSVIKGILKEKNVDPKKFEPRGILASISNAKNELITASEYIKEASGFYDKMVGEVYEKYEKKLKKNQALDFDDLIMVTIQLFERVPDVLEYYQRKFQYIHVDEYQDTNHAQYLLVKQLASRFKNLCVVGDSDQSIYGWRGADISNIMSFEKDYPNAKTILLEENYRSTKRILEAANRVIENNGNRKPKNLWTSNAEGKKIFYHKALTEKEEAAYVVMKIQEEVNNSNRPLSDFAILYRTNAQSRVMEEYFMKSNMAYTMVGGTKFYDRKEIKDILAYLRLISNNEDDISLTRIVNVPKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAGISPKISKDLVAFHDLIRGFTQMQDFLSVTELVEEILEKTGYRAMLKNERTIEAQTRLENIDEFLSVTQNFEKENDDKTLIAFLTDLALVADVDKLEEDNEEQNGAVTLMTLHSAKGLEFPVVFLVGMEEGIFPHSRAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRMLYGRPSSNQESRFIGEIPRDLLELGNENKLKADKPYAKPRIPQKTTTAYKSSGAETLGWTVGDKASHKKWGVGTVVSVKGEGSGMELDIAFPSPTGVKRLLAEFAPIEKV

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_K_5(4C30)
?
[Raw transfer]
-
NACID_D_2(2PJR)
?
[Raw transfer]
-
NACID_C_1(1UAA)
REP_ECOLI
[Raw transfer]
-
NACID_C_1(2PJR)
?
[Raw transfer]
-
NACID_D_2(2PJR)
?
[Raw transfer]
-
NACID_C_1(2PJR)
?
[Raw transfer]
-
NACID_D_2(2IS6)
UVRD_ECOLI
[Raw transfer]
-
NACID_E_3(2IS1)
UVRD_ECOLI
[Raw transfer]
-
NACID_C_1(1UAA)
REP_ECOLI
[Raw transfer]
-
NACID_C_1(1UAA)
REP_ECOLI
[Raw transfer]
-
NACID_C_1(2IS1)
UVRD_ECOLI
[Raw transfer]
-
CHAIN_M_5(4C2T)
?
[Raw transfer]
-
CHAIN_X_7(4C30)
?
[Raw transfer]
-
CHAIN_Y_8(4C30)
?
[Raw transfer]
-
CHAIN_L_6(4C30)
?
[Raw transfer]
-
NACID_Y_1(3PJR)
?
[Raw transfer]
-
CHAIN_X_3(4C2U)
?
[Raw transfer]
-
CHAIN_Y_4(4C2U)
?
[Raw transfer]
-
22 PsiBlast_PDB 96.6964% -88 - C3 -3PJR 7.1 ?
1 HHSearch 94.4265% -86 - C3 -1PJR - PCRA_GEOSE -
23 PsiBlast_PDB 94.1964% -86 - C3 -1PJR - PCRA_GEOSE -
29 PsiBlast_PDB 90.8843% -73 - C3 -4C2U 9.1 ?
47 PsiBlast_CBE 90.6843% -74 - C3 -4C2U 11.8 ?
46 PsiBlast_CBE 90.4443% -80 - C3 -4C30 7.6 ?
44 PsiBlast_CBE 90.4243% -80 - C3 -4C30 8.0 ?
28 PsiBlast_PDB 90.0041% -76 - C3 -2IS6 4.0 UVRD_ECOLI
24 PsiBlast_PDB 89.3366% -89 - C3 -2PJR 12.2 ?
25 PsiBlast_PDB 88.9242% -74 - C3 -4C2T 4.6 ?
30 PsiBlast_PDB 88.5243% -77 - C3 -4C30 5.1 ?
45 PsiBlast_CBE 88.4443% -73 - C3 -4C30 2.1 ?
42 PsiBlast_CBE 88.1842% -75 - C3 -4C2T - ? -
41 PsiBlast_CBE 88.1566% -85 - C3 -2PJR 10.9 ?
27 PsiBlast_PDB 87.9141% -82 - C3 -2IS2 - UVRD_ECOLI -
26 PsiBlast_PDB 87.5241% -80 - C3 -2IS1 10.6 UVRD_ECOLI
3 HHSearch 85.5041% -78 - C3 -1UAA 9.8 REP_ECOLI
43 PsiBlast_CBE 85.4241% -80 - C3 -2IS1 7.5 UVRD_ECOLI
31 PsiBlast_PDB 85.0440% -78 - C3 -1UAA 9.8 REP_ECOLI
48 PsiBlast_CBE 83.7440% -76 - C3 -1UAA 11.0 REP_ECOLI
51 PsiBlast_CBE 34.5672% -15 - C3 -2PJR 3.2 ?
52 PsiBlast_CBE 33.1572% -7 - C3 -2PJR 5.0 ?