@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1993: (2016-03-30 )
MRMVDIISKKRDGKALSTEEIQFFIDGYTNGEIPDYQASALAMAIFFQDMNDQERADLTMAMVGSGDTIDLSEIEGIKVDKHSTGGVGDTTTLVLAPLVAAVGVPVAKMSGRGLGHTGGTIDKLESIEGFHIELDKKDFIDLVNRDKVAVIGQSGNLTPADKKMYALRDVTGTVNSIPLIASSIMSKKIAAGADAIVLDVKTGAGAFMKTDEDAENLAHAMVRIGNNVGRNTMAVISDMSQPLGEAIGNALEVKEAIDTLKGQGPEDLTELVLVLGSQMVVLAKQAETLDEARAKLIEVIENGAALEKFKTFLSNQGGDASIVDHPEKLPQAKYQIEVPAKTSGFVSQIVADEIGIAAMILGAGRATKEDEINLAVGLMLRKKVGDAVKEGESLVTIFADQEDVENVKAKIYENIQISDHAIAPTLVHKVITE

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

IUR_A_3(2WK6)
TYPH_HUMAN
[Raw transfer]



IUR_B_4(2WK6)
TYPH_HUMAN
[Raw transfer]



CMU_A_2(1UOU)
TYPH_HUMAN
[Raw transfer]



URA_B_7(1BRW)
PDP_GEOSE
[Raw transfer]



CMU_A_2(1UOU)
TYPH_HUMAN
[Raw transfer]



THM_A_2(3H5Q)
PDP_STAAC
[Raw transfer]



0NP_A_2(4EAD)
TYPH_ECOLI
[Raw transfer]
1 PsiBlast_PDB 99.0173% -86 - C4 -3H5Q - PDP_STAAC -
32 HHSearch 98.6175% -81 - C4 -3H5Q 4.0 PDP_STAAC
21 PsiBlast_CBE 97.0368% -84 - C4 -1BRW - PDP_GEOSE -
2 PsiBlast_PDB 95.4868% -85 - C4 -1BRW 2.6 PDP_GEOSE
31 HHSearch 95.3966% -78 - C4 -1BRW - PDP_GEOSE -
22 PsiBlast_CBE 86.4546% -73 - C4 -2DSJ - ? -
3 PsiBlast_PDB 85.9146% -68 - C4 -2DSJ - ? -
29 HHSearch 85.0746% -68 - C4 -2DSJ - ? -
10 PsiBlast_PDB 82.0847% -70 - C4 -4LHM - TYPH_ECOLI -
8 PsiBlast_PDB 81.9947% -71 - C4 -4EAD 4.7 TYPH_ECOLI
9 PsiBlast_PDB 81.9847% -72 - C4 -4EAF - TYPH_ECOLI -
7 PsiBlast_PDB 81.4447% -68 - C4 -2TPT - TYPH_ECOLI -
5 PsiBlast_PDB 81.1447% -71 - C4 -1OTP - TYPH_ECOLI -
26 PsiBlast_CBE 80.8337% -66 - C4 -2WK5 - TYPH_HUMAN -
23 PsiBlast_CBE 80.6738% -67 - C4 -2J0F - TYPH_HUMAN -
11 PsiBlast_PDB 80.6138% -67 - C4 -2J0F - TYPH_HUMAN -
14 PsiBlast_PDB 80.5438% -71 - C4 -1UOU 5.7 TYPH_HUMAN
24 PsiBlast_CBE 80.5038% -66 - C4 -2J0F - TYPH_HUMAN -
30 HHSearch 80.3838% -70 - C4 -1UOU 5.7 TYPH_HUMAN
4 PsiBlast_PDB 80.0947% -69 - C4 -1AZY - TYPH_ECOLI -
25 PsiBlast_CBE 79.6437% -66 - C4 -2WK6 3.8 TYPH_HUMAN
13 PsiBlast_PDB 79.4637% -66 - C4 -2WK6 3.9 TYPH_HUMAN