@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2252: (2016-04-02 )
MNHSKIAKKHQQMPVNILADIGTLAKTMPDILDLSIGDPDLITDESIINAAFEDVRAGHTKYTESGGDVELIDAIRGYFSRNYDLSFERSQIRATVGALHGMYLTLQTILDDGDEVIIHEPYFSPYKDQVLNSGGTPIIIPTYEKDDFAINVDILEAAITDKTKALILNSPNNPTGAVFSPETFEKIANLAKKYDFFILSDEVYDGFSFYEDFVPMAKFAPDHTITFGSMSKNFAMTGWRLGYMIAPTYLNEAAKIINEGITYSAPTPSQRAAIYALNHSETLIPLVAETFQKRLEYIAKRVEKIPYLSLHPLKGSIYAFINISKTNMDSVSFTEYVLKETQVLVIPGLAFGESGDNYVRLAATQDISVLEEAFNRLAKLTF

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLP_F_6(1GDE)
?
[Raw transfer]



GOL_A_8(3E2Y)
KAT3_MOUSE
[Raw transfer]



PLP_F_6(1GCK)
AAT_THET8
[Raw transfer]



PLP_B_4(1GD9)
?
[Raw transfer]



EPE_G_7(2DOU)
?
[Raw transfer]



PLP_B_13(1O4S)
AAT_THEMA
[Raw transfer]



PLP_A_12(1O4S)
AAT_THEMA
[Raw transfer]



PLP_A_12(1O4S)
AAT_THEMA
[Raw transfer]



PLP_A_3(1GD9)
?
[Raw transfer]



GLU_D_4(1GDE)
?
[Raw transfer]



ASP_D_4(1GCK)
AAT_THET8
[Raw transfer]



PMP_A_4(3E2Y)
KAT3_MOUSE
[Raw transfer]



PLP_A_5(1B5O)
AAT_THET8
[Raw transfer]



PLP_E_5(1GCK)
AAT_THET8
[Raw transfer]



PLP_A_5(5BJ4)
AAT_THET8
[Raw transfer]



PLP_A_5(1B5P)
AAT_THET8
[Raw transfer]



PLP_A_5(1B5P)
AAT_THET8
[Raw transfer]



PLP_B_6(1B5P)
AAT_THET8
[Raw transfer]



KMT_E_5(1V2E)
?
[Raw transfer]



PLP_B_6(5BJ4)
AAT_THET8
[Raw transfer]



PLP_B_6(1B5O)
AAT_THET8
[Raw transfer]



HCI_E_5(1V2F)
?
[Raw transfer]



ASP_C_3(1GCK)
AAT_THET8
[Raw transfer]



MES_A_3(3JTX)
?
[Raw transfer]
54 HHSearch 95.4334%-100 - C1 -1GD9 4.9 ?
2 PsiBlast_PDB 91.9636% -99 - C1 -1GD9 - ? -
22 PsiBlast_CBE 91.4736% -98 - C1 -1GD9 4.6 ?
21 PsiBlast_CBE 91.4236% -96 - C1 -1GDE 6.3 ?
1 PsiBlast_PDB 91.4036% -97 - C1 -1GDE - ? -
46 PsiBlast_CBE 90.2232%-103 - C1 -1XI9 - ? -
45 PsiBlast_CBE 90.2032% -99 - C1 -1XI9 - ? -
44 PsiBlast_CBE 89.3232%-100 * C1 *1XI9 - ? -
57 HHSearch 88.7932% -97 - C1 -1O4S 4.3 AAT_THEMA
13 PsiBlast_PDB 88.7930% -94 - C1 -1J32 - ? -
26 PsiBlast_CBE 88.0331% -95 - C1 -1O4S 4.0 AAT_THEMA
15 PsiBlast_PDB 87.3732% -98 - C1 -1XI9 - ? -
55 HHSearch 86.3430% -92 - C1 -1J32 - ? -
70 HHSearch 86.2531% -97 - C1 -1XI9 - ? -
4 PsiBlast_PDB 86.0731% -92 - C1 -1O4S 4.3 AAT_THEMA
33 PsiBlast_CBE 85.9633% -90 - C1 -1GC4 - AAT_THET8 -
36 PsiBlast_CBE 85.9233% -92 - C1 -1GC3 - AAT_THET8 -
23 PsiBlast_CBE 85.8932% -90 - C1 -5BJ3 - AAT_THET8 -
25 PsiBlast_CBE 85.7232% -90 - C1 -5BJ3 - AAT_THET8 -
5 PsiBlast_PDB 85.7233% -90 - C1 -1GCK 4.7 AAT_THET8
11 PsiBlast_PDB 85.0733% -90 - C1 -1B5O 4.2 AAT_THET8
56 HHSearch 84.9832% -90 - C1 -1B5P 4.3 AAT_THET8
27 PsiBlast_CBE 84.6733% -90 - C1 -1GCK 6.1 AAT_THET8
28 PsiBlast_CBE 84.5133% -90 - C1 -1B5P 4.3 AAT_THET8
6 PsiBlast_PDB 84.3833% -89 - C1 -1B5P 4.3 AAT_THET8
32 PsiBlast_CBE 83.7433% -89 - C1 -5BJ4 4.4 AAT_THET8
43 PsiBlast_CBE 83.5833% -90 - C1 -1B5O 4.5 AAT_THET8
10 PsiBlast_PDB 83.5233% -89 - C1 -5BJ4 4.4 AAT_THET8