@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2413: (2016-04-03 )
MIDIQKIRADFPILAQEINEKPLAYLDNAATSQKPKQVIEALTHYYEFDNANVHRGVHTLAARATDAYESARGKVAKFIHAREVAEIIFTRGTTSAINLVVDSYAEANIEAGDEIVISYLEHHSNLIPWQQLAKRKGAVLKYIELEEDGTISVEQAKKTIGEKTKIVALAHVSNVLGTITPIKEIAAIAHQFGAVILVDGAQAVPHMEVDVVDLDADFYAFSGHKMMAPTGIGALYGKRELLDAMEPTEFGGEMIDFVELYDSTWKELPWKFEAGTPIIGGAIALGAAIDYLAEVGLENIHAHEQALASYAMEEMSKIEGITIYGPKDASKRCGLVTFNLEGAHPHDIATILDEDGVAIRAGHHCAQPLMKWLDVSSTARASFYIYNTKEEIDALIDGLKLTKEYFGL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_G_7(1T3I)
CSD_SYNY3
[Raw transfer]



GOL_A_5(4LW2)
CSDA_ECOLI
[Raw transfer]



LPG_C_3(1I29)
SUFS_ECOLI
[Raw transfer]



ACY_E_5(1C0N)
SUFS_ECOLI
[Raw transfer]



PLP_B_5(1T3I)
CSD_SYNY3
[Raw transfer]



PLP_E_5(1I29)
SUFS_ECOLI
[Raw transfer]



PLP_A_3(1JF9)
SUFS_ECOLI
[Raw transfer]



PLP_B_6(4LW4)
CSDA_ECOLI
[Raw transfer]



PLP_B_6(4LW2)
CSDA_ECOLI
[Raw transfer]



SLP_A_4(3A9Z)
SCLY_RAT
[Raw transfer]



PLP_C_8(4LW2)
CSDA_ECOLI
[Raw transfer]



PLP_A_4(4LW2)
CSDA_ECOLI
[Raw transfer]



CYS_E_5(1ECX)
?
[Raw transfer]



PLP_A_3(1C0N)
SUFS_ECOLI
[Raw transfer]



PLP_A_5(4LW4)
CSDA_ECOLI
[Raw transfer]
2 PsiBlast_PDB 86.1249%-106 - C1 -1JF9 3.8 SUFS_ECOLI
22 PsiBlast_CBE 85.3946%-110 - C1 -4W91 - ? -
24 PsiBlast_CBE 84.2046%-108 - C1 -4W91 - ? -
1 PsiBlast_PDB 84.0049%-103 - C1 -1I29 4.4 SUFS_ECOLI
23 PsiBlast_CBE 83.9446%-108 - C1 -4W91 - ? -
3 PsiBlast_PDB 83.7351%-103 - C1 -4Q76 - CNIF1_ARATH -
21 PsiBlast_CBE 83.6155%-100 - C1 -1T3I 3.3 CSD_SYNY3
25 PsiBlast_CBE 83.2946%-108 - C1 -4W91 - ? -
4 PsiBlast_PDB 82.2248%-103 - C1 -1C0N 3.7 SUFS_ECOLI
6 PsiBlast_PDB 73.0842%-100 - C1 -4LW2 3.2 CSDA_ECOLI
30 PsiBlast_CBE 72.0742% -98 - C1 -4LW2 3.4 CSDA_ECOLI
29 PsiBlast_CBE 71.3642%-102 - C1 -4LW2 3.2 CSDA_ECOLI
7 PsiBlast_PDB 71.0542%-104 - C1 -4LW4 3.8 CSDA_ECOLI
28 PsiBlast_CBE 70.3642%-101 - C1 -4LW4 3.6 CSDA_ECOLI
104 HHSearch 67.0525%-102 * C1 *1EG5 - ? -
92 Fugue 60.4023% -92 - C1 -1ECX - ? -
5 PsiBlast_PDB 60.0846% -67 - C1 -4W91 - ? -
27 PsiBlast_CBE 59.5646% -66 - C1 -4W91 - ? -
26 PsiBlast_CBE 59.4346% -65 - C1 -4W91 - ? -
95 Fugue 58.8126% -91 - C1 -4ISY - ISCSL_MYCTU -