@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2641: (2016-04-05 )
MQLHAMWDEYPALSKDLQEVLQTIEKNIQIRDKHVEQNVKDLIHAGGKLLRPAFALLSAQAGPDYDKDRAVSIAAALEVLHMATLIHDDVVDDSPLRRGIPTIHSKYGRNYAVYTGDYLFCICFKILSAHASSVENIEFNSKNIEKILMGELDQMRTSYKMNVTVREYLTRISGKTAQLFALSCYSGATGSKATRMTVAKCYNIGHYLGMAFQIIDDVLDYTSTDEGLGKPVLNDMKQGIYSLPLIYAMKGHLAEFEPLLSQKLDMTDEASEQVLALISKYKGVEQAFKLAKKYTNKALREIKKLPAGAYREDMYRLTKNILDRDI

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

RIS_A_10(1RQJ)
ISPA_ECOLI
[Raw transfer]



2DE_B_8(3AQC)
HEXB_MICLU
[Raw transfer]



2DE_D_13(3AQC)
HEXB_MICLU
[Raw transfer]



IPE_B_13(3Q1O)
?
[Raw transfer]



IPE_B_7(3OYR)
?
[Raw transfer]



IPE_C_18(3Q1O)
?
[Raw transfer]



IPE_A_7(3Q1O)
?
[Raw transfer]



IPE_D_24(3Q1O)
?
[Raw transfer]



IPE_B_4(3OYR)
?
[Raw transfer]



GOL_A_5(3Q2Q)
?
[Raw transfer]



GOL_A_2(3LK5)
?
[Raw transfer]



IPE_A_3(3WJO)
?
[Raw transfer]



IPR_A_9(1RQJ)
ISPA_ECOLI
[Raw transfer]



CIT_A_3(3PKO)
?
[Raw transfer]



IPE_A_4(3WJO)
?
[Raw transfer]



POP_A_3(3OYR)
?
[Raw transfer]



POP_A_3(3OYR)
?
[Raw transfer]
1 PsiBlast_PDB 96.8937% -99 - C1 -3PKO - ? -
2 PsiBlast_PDB 96.5437% -96 - C1 -3N3D - ? -
60 HHSearch 95.5337%-101 - C1 -3PKO 3.2 ?
22 PsiBlast_CBE 95.4537% -97 - C1 -3N3D - ? -
21 PsiBlast_CBE 93.7337% -97 - C1 -3PKO - ? -
3 PsiBlast_PDB 85.2632% -88 - C1 -3AQB - HEXB_MICLU -
57 HHSearch 84.3731% -85 * C1 *3AQB - HEXB_MICLU -
23 PsiBlast_CBE 84.2832% -90 - C1 -3AQC 4.0 HEXB_MICLU
24 PsiBlast_CBE 84.1832% -88 - C1 -3AQB - HEXB_MICLU -
4 PsiBlast_PDB 83.9832% -88 - C1 -3AQC 4.1 HEXB_MICLU
82 Fugue 83.2930% -80 - C1 -3AQB - HEXB_MICLU -
59 HHSearch 82.5528% -81 - C1 -1WY0 - ? -
26 PsiBlast_CBE 80.9134% -79 - C1 -3OYR 5.4 ?
7 PsiBlast_PDB 79.9727% -93 - C1 -3Q2Q 1.8 ?
85 Fugue 79.4529% -91 - C1 -3OYR - ? -
54 HHSearch 77.5730% -89 - C1 -3OYR 3.4 ?
6 PsiBlast_PDB 76.3731% -94 - C1 -3WJO 3.6 ?
12 PsiBlast_PDB 76.2530% -79 - C1 -1WY0 - ? -
13 PsiBlast_PDB 76.2229% -78 - C1 -3AQ0 - SPS3_ARATH -
25 PsiBlast_CBE 74.7531% -98 - C1 -3WJN - ? -
8 PsiBlast_PDB 74.1434% -89 - C1 -3OYR 3.4 ?
45 PsiBlast_CBE 51.9432% -61 - C1 -3Q1O 3.8 ?
44 PsiBlast_CBE 51.8832% -57 - C1 -3Q1O 3.6 ?
47 PsiBlast_CBE 51.7432% -62 - C1 -3Q1O 4.1 ?
46 PsiBlast_CBE 51.1032% -59 - C1 -3Q1O 3.2 ?