@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0117: (2015-11-28 )
MSNIVIIGSISMDLVMETNRIAKEGETVFGQRFSMVPGGKGANQAVAIGRLSQDRDNITILGAIGEDSFGPILLDNLNKNHVTTDFVGTIPSSSGVAQITLYNNDNRIIYCPGANGKVDTKKWSQEWSIIKEADLVVLQNEIPHQANMKIANFCKEHSIKLLYNPAPSRKTDIEMLDKVDYFTPNEHECQELFPNQKLEDILATYPEKLIVTLGTKGAIYSDGKESHLIPALETKAVDTTGAGDTFNGAFGYAISKKFKIANALRFATLAAHLSVQKFGAQGGMPTIKEMEDNQHYEKDWHIK

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_B_9(4XDA)
?
[Raw transfer]



ADP_B_9(4XCK)
?
[Raw transfer]



RIB_D_15(1GQT)
RBSK_ECOLI
[Raw transfer]



ACP_A_6(1GQT)
RBSK_ECOLI
[Raw transfer]



RIB_C_3(1RKS)
RBSK_ECOLI
[Raw transfer]



ATP_A_5(3IKH)
?
[Raw transfer]



GOL_A_2(3RY7)
?
[Raw transfer]



ACP_B_9(1GQT)
RBSK_ECOLI
[Raw transfer]



ADP_B_8(2FV7)
RBSK_HUMAN
[Raw transfer]



ADP_C_12(4XCK)
?
[Raw transfer]



ADP_A_7(2FV7)
RBSK_HUMAN
[Raw transfer]



ADP_A_7(2FV7)
RBSK_HUMAN
[Raw transfer]



ADP_A_17(1RK2)
RBSK_ECOLI
[Raw transfer]



ADP_C_19(1RK2)
RBSK_ECOLI
[Raw transfer]



ADP_A_6(4XCK)
?
[Raw transfer]



ADP_C_12(4XDA)
?
[Raw transfer]



ADP_D_15(4XDA)
?
[Raw transfer]



ADP_D_14(4XCK)
?
[Raw transfer]



ADP_I_9(1RKD)
RBSK_ECOLI
[Raw transfer]



ACP_C_12(1GQT)
RBSK_ECOLI
[Raw transfer]



ADP_I_9(1RKD)
RBSK_ECOLI
[Raw transfer]



ADP_B_18(1RK2)
RBSK_ECOLI
[Raw transfer]



ADP_A_6(4XDA)
?
[Raw transfer]



ADP_D_20(1RK2)
RBSK_ECOLI
[Raw transfer]
4 PsiBlast_PDB 93.5233% -72 - C1 -4XDA 4.6 ?
58 HHSearch 93.1932% -68 * C1 *1RKD 5.3 RBSK_ECOLI
23 PsiBlast_CBE 93.1633% -74 - C1 -4XDA 5.0 ?
24 PsiBlast_CBE 92.9233% -68 - C1 -4XCK 5.6 ?
26 PsiBlast_CBE 92.3333% -69 - C1 -4XCK 4.4 ?
21 PsiBlast_CBE 92.2733% -73 - C1 -4XDA 5.2 ?
22 PsiBlast_CBE 92.0933% -71 - C1 -4XDA 5.4 ?
25 PsiBlast_CBE 91.9233% -73 - C1 -4XCK 6.2 ?
3 PsiBlast_PDB 91.5933% -73 - C1 -4XCK 5.6 ?
11 PsiBlast_PDB 91.5532% -68 - C1 -1RKD 5.7 RBSK_ECOLI
10 PsiBlast_PDB 91.2732% -66 - C1 -1GQT 5.2 RBSK_ECOLI
8 PsiBlast_PDB 91.1632% -66 - C1 -1RKA - RBSK_ECOLI -
31 PsiBlast_CBE 90.9132% -65 - C1 -1GQT 3.1 RBSK_ECOLI
33 PsiBlast_CBE 90.8832% -65 - C1 -1GQT 5.9 RBSK_ECOLI
59 HHSearch 90.5532% -72 - C1 -2FV7 6.0 RBSK_HUMAN
7 PsiBlast_PDB 90.2732% -64 - C1 -1RK2 5.5 RBSK_ECOLI
9 PsiBlast_PDB 90.2532% -66 - C1 -1RKS 3.5 RBSK_ECOLI
2 PsiBlast_PDB 90.0933% -73 - C1 -4X8F - ? -
32 PsiBlast_CBE 89.5132% -65 - C1 -1GQT 4.4 RBSK_ECOLI
29 PsiBlast_CBE 89.3632% -65 - C1 -1RK2 5.7 RBSK_ECOLI
30 PsiBlast_CBE 89.3132% -66 - C1 -1RK2 5.8 RBSK_ECOLI
28 PsiBlast_CBE 89.2132% -66 - C1 -1RK2 5.3 RBSK_ECOLI
61 HHSearch 86.4932% -73 - C1 -3RY7 3.7 ?
6 PsiBlast_PDB 85.2731% -63 - C1 -2FV7 6.0 RBSK_HUMAN
27 PsiBlast_CBE 85.0431% -60 - C1 -2FV7 6.4 RBSK_HUMAN