@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0507: (2015-12-01 )
MSIIKNLWWFFKEEKKRYLIGILSLSLVAVLNLIPPKIMGSVIDAITTGKLTRPQLLWNLLGLVLSALAMYGLRYIWRMYILGTSYKLGQVVRYRLFEHFTKMSPSFYQKYRTGDLMAHATNDINSLTRLAGGGVMSAVDASITALVTLITMFFTISWQMTLIAVIPLPLMALATSKLGRKTHETFKESQAAFSELNNKVQESVSGVKVTKSFGYQEQEIASFQEINQMTFVKNMRTMTYDVMFDPLVLLFIGASYVLTLAMGAFMISKGQVTVGDLVTFVTYLDMLVWPLMAIGFLFNMVQRGSVSYNRINSLLEQESDITDPLNPIKPVVNGTLRYDIDFFRYDNEETLADIHFTLEKGQTLGLVGQTGSGKTSLIKLLLREHDVTQGKITLNKHDIRDYRLSELRQLIGYVPQDQFLFATSILENVRFGNPTLSINAVKEATKLAHVYDDIEQMPAGFETLIGEKGVSLSGGQKQRIAMSRAMILDPDILILDDSLSAVDAKTEHAIVENLKTNRQGKSTIISAHRLSAVVHADLILVMRDGRVIERGQHQELLNKGGWYAETYASQQLEMEEAFDEV

Atome Classification :

(29 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_D_5(3VX4)
?
[Raw transfer]



ADP_A_2(3NHB)

[Raw transfer]



ADP_A_3(3NHA)

[Raw transfer]



ATP_A_3(3VX4)
?
[Raw transfer]



ATP_A_3(3VX4)
?
[Raw transfer]



ATP_A_3(2CBZ)

[Raw transfer]



ATP_A_2(3NH9)

[Raw transfer]



BME_A_2(3NH6)

[Raw transfer]



BME_A_2(3NH6)

[Raw transfer]
21 PsiBlast_CBE 89.0431% -94 - C1 -2ONJ - Y1866_STAAM -
22 PsiBlast_CBE 88.9431% -95 - C1 -2HYD - Y1866_STAAM -
6 PsiBlast_PDB 88.2331% -94 - C1 -2ONJ - Y1866_STAAM -
5 PsiBlast_PDB 88.0131% -94 - C1 -2HYD - Y1866_STAAM -
1 PsiBlast_PDB 85.3232%-104 - C1 -3QF4 - Y288_THEMA -
3 PsiBlast_PDB 85.0532%-102 - C1 -4Q4H - Y288_THEMA -
2 PsiBlast_PDB 84.5732%-104 - C1 -4Q4A - Y288_THEMA -
4 PsiBlast_PDB 84.2032%-102 - C1 -4Q4J - Y288_THEMA -
103 HHSearch 81.7525% -91 - C1 -3WMG - ? -
121 Fugue 80.8828% -84 - C1 -3B60 - MSBA_SALTY -
100 HHSearch 80.7228% -85 - C1 -3B60 - MSBA_SALTY -
11 PsiBlast_PDB 79.8029% -87 - C1 -3B60 - MSBA_SALTY -
7 PsiBlast_PDB 78.0931% -93 - C1 -4A82 - Y1866_STAAM -
102 HHSearch 77.7927% -92 - C1 -3ZDQ - ABCBA_HUMAN -
14 PsiBlast_PDB 77.3629% -93 - C1 -4AYX - ABCBA_HUMAN -
13 PsiBlast_PDB 76.2429% -91 - C1 -4AYT - ABCBA_HUMAN -
124 Fugue 76.1925% -94 - C1 -4F4C - PGP1_CAEEL -
15 PsiBlast_PDB 75.9829% -92 - C1 -3ZDQ - ABCBA_HUMAN -
16 PsiBlast_PDB 75.9629% -95 - C1 -4AYW - ABCBA_HUMAN -
17 PsiBlast_PDB 73.4429% -96 - C1 -4RY2 - ? -
23 PsiBlast_CBE 59.6539% -77 - C1 -3NHB 6.4
26 PsiBlast_CBE 59.4539% -79 - C1 -3NH6 1.4
24 PsiBlast_CBE 59.1439% -78 - C1 -3NHA 6.6
25 PsiBlast_CBE 57.5639% -76 - C1 -3NH9 6.1
104 HHSearch 56.9938% -75 - C1 -3NH6 1.4
106 HHSearch 56.4635% -84 * C1 *3VX4 6.5 ?
51 PsiBlast_CBE 55.3035% -83 - C1 -3VX4 6.4 ?
50 PsiBlast_CBE 55.0335% -81 - C1 -3VX4 6.1 ?
62 PsiBlast_CBE 49.6837% -73 - C1 -2CBZ 5.7