@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0946: (2015-12-04 )
MSKIVVVGTNHAGTAAIKTMLSNYGEANEIVTFDQNSNISFLGCGMALWIGEQIDGPEGLFYSDKEQLESMGAKVYMNSPVLNIDYDKKEVTALVDGKEHVESYEKLILATGSQPIIPPIKGVEIQEGSREFKATLENLQFVKLYQNSEEVIEKLAKPGINRVAVVGAGYIGVELAEAFQRIGKEVTLVDVADTCMGGYYDRDFTDMMSKNLEDHGIRLAFGQAVQAVEGDGKVERLVTDKETFDVDMVILAVGFRPNTELGAGKLDTFRNGAWVVDKKQETSVKDVYAIGDCATIWDNSRDDINYIALASNAVRTGIVAAHNACGTELEGAGVQGSNGISIYGLNMVSTGLTLEKAKQAGYNAVETGFNDLQKPEFIKHNNHEVAIKIVYDKDSRVILGCQMVSHEDVSMGIHMFSLAIQEKVTIEKLALTDIFFLPHFNKPYNYITMAALGAKD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_B_3(2BC1)
NAOX_STRP6
[Raw transfer]




FAD_F_6(2BCP)
NAOX_STRP6
[Raw transfer]




FAD_E_5(2BCP)
NAOX_STRP6
[Raw transfer]




FAD_A_4(2BC1)
NAOX_STRP6
[Raw transfer]




CYO_B_2(2NPX)
NAPE_ENTFA
[Raw transfer]




CYO_B_2(1NPX)
NAPE_ENTFA
[Raw transfer]




CYO_C_3(1NHS)
NAPE_ENTFA
[Raw transfer]




21 PsiBlast_CBE 99.0479%-106 - C1 -2BCP 13.4 NAOX_STRP6
22 PsiBlast_CBE 98.7579%-107 - C1 -2BC1 13.3 NAOX_STRP6
1 PsiBlast_PDB 98.3879%-106 * C1 *2BC1 13.1 NAOX_STRP6
2 PsiBlast_PDB 97.1679%-105 - C1 -2BCP 13.3 NAOX_STRP6
63 HHSearch 79.0237% -99 - C1 -1NHP - NAPE_ENTFA -
3 PsiBlast_PDB 78.4936%-106 - C1 -1NHR - NAPE_ENTFA -
6 PsiBlast_PDB 78.3936%-104 - C1 -1JOA - NAPE_ENTFA -
9 PsiBlast_PDB 78.3536%-107 - C1 -1NHS 2.0 NAPE_ENTFA
8 PsiBlast_PDB 78.3436%-105 - C1 -2NPX 2.1 NAPE_ENTFA
4 PsiBlast_PDB 78.3336%-106 - C1 -1NHP - NAPE_ENTFA -
5 PsiBlast_PDB 78.2736%-105 - C1 -1NHQ - NAPE_ENTFA -
7 PsiBlast_PDB 78.1236%-104 - C1 -1NPX 2.1 NAPE_ENTFA
70 HHSearch 72.3326%-101 - C1 -3ICS - ? -
69 HHSearch 71.8628% -94 - C1 -3NTD - ? -
65 HHSearch 71.7826% -94 - C1 -3OC4 - ? -
11 PsiBlast_PDB 71.6227%-101 - C1 -3CGD - ? -
66 HHSearch 71.5727% -97 - C1 -3IWA - ? -
12 PsiBlast_PDB 71.3327%-104 - C1 -3CGE - ? -
15 PsiBlast_PDB 71.1426% -93 - C1 -4OCG - ? -
16 PsiBlast_PDB 71.1326% -93 - C1 -3NTA - ? -