@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1400: (2015-12-07 )
MKTKSQKTSFFSNLSPYLKGYKLLFALAIVLATLSSLTTVIGPDRLKEMTDLMVKGLAGNIDLAKIGHIAGQLAVLYVLGALVSYLASFIVTTIIQKFAQGMRNAIADKINKIPLSYFDSHTQGDTLSRVTNDVDLMTQSFNQSLVTMVASTVLLIGSLIMMFKTDWHLATTAIISVFSGFALSSIIMVKSQPLFKKQQMNLANISGYVEEIYSGHNIVTSHNARQQAKSDFQLLNDKLHSSMWKSQFFSGIMMPLMQFIGNFGYVMVCVVGAMLAIKGTITMGTIVAFMTYVRIFTQPIGQIAQGITQLQSASAAMGRVFEFLNETNMQEDKHKVLNLPKFKGYVSFEHVKFGYSDNKTIIHDFTSEAQPGQKVAIVGPTGAGKTTIVNLLMRFYDVNSGSISIDDINIQDMKRSQVHDAFSMVLQDIWLFEGTIKENLIFNQTTISDDEVQEAAKAVGVHHFIMTLPKGYDTVLDDAVTLSVGQKQLLTIARALLKNSPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIKNADLILVMKDGNIIEQGSHDVLMSQSGFYADLYNSQFESA

Atome Classification :

(35 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]



ATP_D_12(1XEF)

[Raw transfer]



ATP_H_8(2FGK)

[Raw transfer]



ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]



ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]



ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]



ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]



ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]



ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]



128_A_2(2PMK)

[Raw transfer]



ATP_H_8(2FGJ)

[Raw transfer]



ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]



ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]



ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]



ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]
1 PsiBlast_PDB 93.5839%-123 - C1 -3QF4 - Y288_THEMA -
3 PsiBlast_PDB 93.4139%-119 - C1 -4Q4H - Y288_THEMA -
2 PsiBlast_PDB 93.0539%-122 - C1 -4Q4A - Y288_THEMA -
4 PsiBlast_PDB 92.1139%-120 - C1 -4Q4J - Y288_THEMA -
15 PsiBlast_PDB 80.2229%-114 - C1 -4AYT - ABCBA_HUMAN -
16 PsiBlast_PDB 79.5429%-117 - C1 -4AYX - ABCBA_HUMAN -
6 PsiBlast_PDB 78.4932%-105 - C1 -2ONJ - Y1866_STAAM -
22 PsiBlast_CBE 78.0932%-105 - C1 -2HYD - Y1866_STAAM -
21 PsiBlast_CBE 77.9632%-106 - C1 -2ONJ - Y1866_STAAM -
17 PsiBlast_PDB 77.9129%-115 - C1 -3ZDQ - ABCBA_HUMAN -
19 PsiBlast_PDB 77.7029%-116 - C1 -4AYW - ABCBA_HUMAN -
93 HHSearch 77.3626%-111 - C1 -3WMG - ? -
5 PsiBlast_PDB 77.3132%-105 - C1 -2HYD - Y1866_STAAM -
81 Fugue 77.0128%-103 - C1 -3B60 - MSBA_SALTY -
90 HHSearch 76.5528%-103 - C1 -3B60 - MSBA_SALTY -
84 Fugue 76.3526%-108 - C1 -4F4C - PGP1_CAEEL -
92 HHSearch 75.5129%-106 - C1 -3ZDQ - ABCBA_HUMAN -
26 PsiBlast_CBE 69.6732%-100 - C1 -3B60 - MSBA_SALTY -
13 PsiBlast_PDB 69.5132%-100 - C1 -3B60 - MSBA_SALTY -
24 PsiBlast_CBE 69.2732%-100 - C1 -3B60 - MSBA_SALTY -
65 PsiBlast_CBE 54.9738%-115 - C1 -1XEF 6.4 HLYBP_ECOLX
63 PsiBlast_CBE 54.4238%-118 - C1 -1XEF 6.8 HLYBP_ECOLX
52 PsiBlast_CBE 54.2038%-117 - C1 -2FGK 7.0
58 PsiBlast_CBE 54.1638%-113 - C1 -2FGJ 6.8 HLYBP_ECOLX
60 PsiBlast_CBE 54.0638%-114 - C1 -2FGJ 6.6 HLYBP_ECOLX
55 PsiBlast_CBE 54.0538%-113 - C1 -2FGK 6.8 HLYBP_ECOLX
64 PsiBlast_CBE 54.0238%-115 - C1 -1XEF 6.8 HLYBP_ECOLX
57 PsiBlast_CBE 53.9738%-118 - C1 -2FGJ 6.4
54 PsiBlast_CBE 53.8438%-119 - C1 -2FGK 7.0 HLYBP_ECOLX
53 PsiBlast_CBE 53.3638%-112 - C1 -2FGK 6.4 HLYBP_ECOLX
59 PsiBlast_CBE 53.0238%-113 - C1 -2FGJ 6.9 HLYBP_ECOLX
62 PsiBlast_CBE 52.3438%-112 - C1 -1XEF 6.8
50 PsiBlast_CBE 52.2640%-113 - C1 -2PMK 7.1
46 PsiBlast_CBE 49.7839%-100 - C1 -1MV5 6.8 LMRA_LACLA
99 HHSearch 47.1040% -94 - C1 -1MV5 6.8 LMRA_LACLA