@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1784: (2015-12-10 )
MFKIPLFKELKTDQWVKPFFKQYKVSLVIALFLGFMTFFSASALMFNSGYLISKSASLPSNILLVYVPIVLTRAFGIGRPVFRYIERLTSHNWVLRMTSQLRLKLYHSLESNAIFMKRDFRLGDVMGLLAEDINYLQNLYLRTIFPTIIAWLLYSFIIIATGFFSLWFALMMLLYLAIMIFLFPLWSILANGARQTREKELKNHLYTDLTDNVLGISDWIFSQRGQEYVALHERSESELMAIQKKIRSFNNRRALIVELVFGFLAILVIIWASNQFIGHRGGEANWIAAFVLTVFPLSEAFAGLSAAAQETNKYSDSIHRLNELSETYFETTQNQLPNKPYDFSVKNLSFQYKPQEKWVLHHLDLDIKEGEKIAILGRSGSGKSTLASLLRGDLKASQGKITLGGADVSIVGDCISNYIGVIQQAPYLFNTTLLNNIRIGNQDASEEDVWKVLERVGLKEMVTDLSDGLYTMVDEAGLRFSGGERHRIALARILLKDVPIVILDEPTVGLDPITEQALLRVFMKELEGKTLVWITHHLKGIEHADRILFIENGQLELEGSPQELSQSSQRYRQLKAADDGDL

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]



ADP_B_2(2FF7)

[Raw transfer]
10 PsiBlast_PDB 86.2227%-106 - C1 -2HYD - Y1866_STAAM -
11 PsiBlast_PDB 85.1827%-105 - C1 -2ONJ - Y1866_STAAM -
17 PsiBlast_PDB 84.6024% -98 - C1 -4Q4J - ? -
116 HHSearch 83.0521%-106 - C1 -3ZDQ - ABCBA_HUMAN -
114 HHSearch 82.1721%-100 - C1 -3B60 - MSBA_SALTY -
104 Fugue 81.3321% -95 - C1 -3B60 - MSBA_SALTY -
117 HHSearch 79.8320%-104 - C1 -3WMG - ? -
1 PsiBlast_PDB 71.6338% -96 - C1 -4MYC - ATM1_YEAST -
2 PsiBlast_PDB 70.0938% -94 - C1 -4MYH - ATM1_YEAST -
84 PsiBlast_CBE 69.7231% -90 - C1 -3WMG - ? -
12 PsiBlast_PDB 69.4127%-104 - C1 -4A82 - Y1866_STAAM -
18 PsiBlast_PDB 68.9431% -81 - C1 -4M1M - MDR1A_MOUSE -
65 PsiBlast_CBE 67.8232% -89 - C1 -4MRP - ATM1_NOVAD -
59 PsiBlast_CBE 67.6932% -87 - C1 -4MRV - ATM1_NOVAD -
66 PsiBlast_CBE 67.4832% -91 - C1 -4MRP - ATM1_NOVAD -
60 PsiBlast_CBE 67.4332% -92 - C1 -4MRV - ATM1_NOVAD -
63 PsiBlast_CBE 67.4032% -92 - C1 -4MRR - ATM1_NOVAD -
20 PsiBlast_PDB 67.3631% -81 - C1 -4M2S - MDR1A_MOUSE -
40 PsiBlast_CBE 67.3131% -78 - C1 -4LSG - MDR1A_MOUSE -
41 PsiBlast_CBE 67.2531% -78 - C1 -4LSG - MDR1A_MOUSE -
124 HHSearch 65.9934% -99 - C1 -2FF7 6.3