@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu00820: (2016-06-02 )
MSQEEHNHEELNDQLQVRRDKMNQLRDNGIDPFGARFERTHQSQEVISAYQDLTKEELEEKAIEVTIAGRMMTKRGKGKAGFAHLQDLEGQIQIYVRKDSVGDDQYEIFKSSDLGDLIGVTGKVFKTNVGELSVKATSFELLTKALRPLPDKYHGLKDVEQRYRQRYLDLIVNPDSKHTFITRSKIIQAMRRYLDDHGYLEVETPTMHSIPGGASARPFITHHNALDIPLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYKDIMSLTENLVAHIAQEVLGTTTIQYGEEQIDLKPEWKRIHMVDAVKEATGVDFWEEVTVEQAREYAKEHEVEIKDSMTVGHIINEFFEQKIEETLIQPTFIYGHPVEISPLAKKNPEDPRFTDRFELFIVGREHANAFTELNDPIDQRERFEAQLKEREAGNDEAHLMDEDFVEALEYGMPPTGGLGIGIDRLVMLLTNAPSIRDVLLFPQMRQR

Atome Classification :

(35 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

LAD_B_2(1E1T)
SYK2_ECOLI
[Raw transfer]




LAD_A_2(4UP7)
?
[Raw transfer]




ATP_A_3(1E24)
SYK2_ECOLI
[Raw transfer]




AMP_B_7(3G1Z)
EPMA_SALTY
[Raw transfer]




ACP_A_3(1E22)
SYK2_ECOLI
[Raw transfer]




AMP_A_3(3G1Z)
EPMA_SALTY
[Raw transfer]




LAD_A_2(4UP7)
?
[Raw transfer]




ANP_A_2(4UPA)
?
[Raw transfer]




GOL_B_9(1E1T)
SYK2_ECOLI
[Raw transfer]




ATP_A_2(4UP9)
?
[Raw transfer]




GOL_B_11(1E1O)
SYK2_ECOLI
[Raw transfer]




KRS_A_4(4YCU)
SYK_HUMAN
[Raw transfer]




KRS_A_4(4YCU)
SYK_HUMAN
[Raw transfer]




KRS_B_8(4YCU)
SYK_HUMAN
[Raw transfer]




LYS_A_3(4EX5)
SYK_BURTA
[Raw transfer]




LYS_A_3(4EX5)
SYK_BURTA
[Raw transfer]




LYS_B_4(4EX5)
SYK_BURTA
[Raw transfer]




LYS_B_3(1E1O)
SYK2_ECOLI
[Raw transfer]




LYS_B_3(1E1O)
SYK2_ECOLI
[Raw transfer]




LYS_C_3(1BBU)
SYK1_ECOLI
[Raw transfer]




27 PsiBlast_CBE 94.3278% -89 - C5 -3A74 - SYK_GEOSE -
29 PsiBlast_CBE 93.9978% -88 - C5 -3A74 - SYK_GEOSE -
65 HHSearch 93.8779% -89 - C5 -3A74 - SYK_GEOSE -
3 PsiBlast_PDB 93.6178% -89 - C5 -3A74 - SYK_GEOSE -
28 PsiBlast_CBE 93.5678% -89 - C5 -3A74 - SYK_GEOSE -
24 PsiBlast_CBE 93.4678% -90 - C5 -3E9H - SYK_GEOSE -
1 PsiBlast_PDB 93.4678% -88 - C5 -3E9H - SYK_GEOSE -
26 PsiBlast_CBE 93.3678% -90 - C5 -3E9H - SYK_GEOSE -
2 PsiBlast_PDB 93.3378% -87 - C5 -3E9I - SYK_GEOSE -
22 PsiBlast_CBE 93.1278% -90 - C5 -3E9I - SYK_GEOSE -
21 PsiBlast_CBE 93.1178% -89 - C5 -3E9I - SYK_GEOSE -
25 PsiBlast_CBE 92.5678% -88 - C5 -3E9H - SYK_GEOSE -
23 PsiBlast_CBE 91.8878% -87 - C5 -3E9I - SYK_GEOSE -
4 PsiBlast_PDB 86.2454% -79 - C5 -1LYL - SYK2_ECOLI -
31 PsiBlast_CBE 85.3854% -81 - C5 -1LYL - SYK2_ECOLI -
30 PsiBlast_CBE 84.7854% -81 - C5 -1LYL - SYK2_ECOLI -
5 PsiBlast_PDB 84.3754% -80 - C5 -1E1O 3.3 SYK2_ECOLI
6 PsiBlast_PDB 84.1354% -78 - C5 -1E1T 8.6 SYK2_ECOLI
55 Fugue 84.1253% -77 - C5 -1LYL - SYK2_ECOLI -
9 PsiBlast_PDB 84.0553% -76 - C5 -1BBU 2.7 SYK1_ECOLI
66 HHSearch 83.9654% -78 - C5 -1E1O 3.3 SYK2_ECOLI
7 PsiBlast_PDB 83.9354% -80 - C5 -1E22 7.1 SYK2_ECOLI
8 PsiBlast_PDB 83.8354% -80 - C5 -1E24 7.0 SYK2_ECOLI
67 HHSearch 82.6752% -79 - C5 -4EX5 3.2 SYK_BURTA
11 PsiBlast_PDB 81.9051% -82 - C5 -4EX5 3.2 SYK_BURTA
68 HHSearch 81.5843% -76 * C5 *4YCU 6.2 SYK_HUMAN
44 PsiBlast_CBE 81.3443% -78 - C5 -4YCU 6.6 SYK_HUMAN
32 PsiBlast_CBE 81.2451% -82 - C5 -4EX5 3.1 SYK_BURTA
17 PsiBlast_PDB 80.8443% -75 - C5 -4YCU 6.2 SYK_HUMAN
70 HHSearch 79.0344% -70 - C5 -4UP7 7.6 ?
20 PsiBlast_PDB 69.1735% -73 - C5 -4UPA 6.1 ?
52 PsiBlast_CBE 68.4935% -67 - C5 -4UP7 6.6 ?
19 PsiBlast_PDB 67.3135% -71 - C5 -4UP9 5.3 ?
54 PsiBlast_CBE 51.7831% -62 - C5 -3G1Z 6.6 EPMA_SALTY
53 PsiBlast_CBE 50.9531% -63 - C5 -3G1Z 6.5 EPMA_SALTY