@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu01120: (2016-06-02 )
MAREFSLEKTRNIGIMAHIDAGKTTTTERILFYTGRIHKIGETHEGASQMDWMEQEQERGITITSAATTAQWKGYRVNIIDTPGHVDFTVEVERSLRVLDGAVAVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKIGADFLYSVGTLRDRLQANAHAIQLPIGAEDNFEGIIDLVENVAYFYEDDLGTRSDAKEIPEEYKEQAEELRNSLIEAVCELDEELMDKYLEGEEITIDELKAGIRKGTLNVEFYPVLVGSAFKNKGVQLVLDAVLDYLPAPTDVAAIKGTRPDTNEEIERHSSDEEPFSALAFKVMTDPYVGKLTFFRVYSGTLDSGSYVKNSTKGKRERVGRILQMHANSREEISTVYAGDIAAAVGLKDTTTGDTLCDEKDLVILESMEFPEPVIDVAIEPKSKADQDKMGIALAKLAEEDPTFRTQTNPETGQTIISGMGELHLDIIVDRMKREFKVEANVGAPQVAYRETFRTGAKVEGKFVRQSGGRGQFGHVWIEFEPNEEGAGFEFENAIVGGVVPREYIPAVQAGLEDALENGVLAGFPLIDIKAKLFDGSYHDVDSNEMAFKVAASMALKNAVSKCNPVLLEPIMKVEVVIPEEYMGDIMGDITSRRGRVEGMEARGNAQVVRAMVPLAEMFGYATALRSNTQGRGTFTMHMDHYEEVPKSVAEEIIKKNKGE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_2(2BM1)
EFG_THETH
[Raw transfer]




GDP_C_3(2EFG)
EFG_THET8
[Raw transfer]




GDP_A_3(4M1K)
?
[Raw transfer]




GDP_A_3(4M1K)
?
[Raw transfer]




GCP_A_2(2J7K)
EFG_THETH
[Raw transfer]




GDP_A_3(4MYT)
EFG_THETH
[Raw transfer]




GDP_A_2(2BM0)
?
[Raw transfer]




GDP_A_3(4MYU)
EFG_THETH
[Raw transfer]




GDP_A_3(1FNM)
EFG_THETH
[Raw transfer]




GCP_A_2(3J25)
TET1_ENTFL
[Raw transfer]




21 PsiBlast_CBE 89.8878% -15 - C- -2XEX - EFG_STAAU -
130 Fugue 89.8466% -87 - C4 -4M1K 6.3 ?
7 PsiBlast_PDB 89.5066% -86 - C4 -4M1K 6.3 ?
12 PsiBlast_PDB 89.1266% -84 - C4 -2BM0 6.5 ?
1 PsiBlast_PDB 88.2978% -15 - C- -2XEX - EFG_STAAU -
3 PsiBlast_PDB 88.2366% -80 - C4 -2J7K 7.2 EFG_THETH
9 PsiBlast_PDB 88.1366% -81 - C4 -1FNM 7.3 EFG_THETH
2 PsiBlast_PDB 87.8666% -79 - C5 -2OM7 - ? -
8 PsiBlast_PDB 87.6866% -82 - C4 -4MYU 6.2 EFG_THETH
104 HHSearch 87.4078% -14 - C- -2XEX - EFG_STAAU -
11 PsiBlast_PDB 86.7466% -81 - C4 -2BM1 7.5 EFG_THETH
6 PsiBlast_PDB 85.6466% -75 - C4 -4MYT 5.4 EFG_THETH
13 PsiBlast_PDB 83.9566% -68 - C5 -3IZP - ? -
132 Fugue 82.2765% -79 - C4 -1ELO - ? -
15 PsiBlast_PDB 82.0361% -65 - C5 -3J0E - EFG_ECOLI -
4 PsiBlast_PDB 81.8466% -78 - C4 -2EFG 7.1 EFG_THET8
17 PsiBlast_PDB 75.3035% -69 - C4 -1WDT - ? -
109 HHSearch 75.2835% -71 * C4 *2DY1 - ? -
18 PsiBlast_PDB 75.2635% -71 - C4 -2DY1 - ? -
134 Fugue 58.3024% -49 - C4 -1N0V - EF2_YEAST -