@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu07060: (2016-06-11 )
MKPKKRQMEYLTRGLIAVQTEQGVFVSWRFLGTDHETTAFHLYRDGKRITRDPIAESTNFLDQNGTADSVYQVAAVNKGREEKLSKKARVWQENVLEVPLAKPEGGVTPDGKPYTYSANDASVGDIDGDGEYEMILKWDPSNSKDNAHDGYTGEVLIDAYKLDGTFLWRINLGRNIRAGAHYTQFMVYDLDGDGKAEIAMKTADGTTDGKGHIIGDEQADFRNEQGRILSGPEYLTVFKGETGEALTTVEYEPPRGKLEDWGDGYGNRMDRFLAGTAYLDGERPSLVMARGYYTRTVLVAYDFRNGRLKKRWVFDSNQPGHEAYAGQGNHSLSVADVDGDGKDEIIYGAMAVDHDGTGLYSTGLGHGDAMHVGDLDPSRKGLEVFQVHEDATKPYGLSLRDAGTGEILWGVHAGTDVGRGMAAHIDPSYKGSLVWGIDPPGNDGMSYGLFTSKGEKISDKAPSSANFAIWWDGDLVRELLDHDWDGTIGRPKIEKWDAENGCLKTIFQPAGVLSNNGTKGNPVLQANLFGDWREEVIWRTEDSSALRIYTTTHLTRHCFYTLMHDPVYRLGIAWQNTAYNQPPHTSFYLGTGMKKPPKPALYIAGSKAEAPL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SUGAR_B_4(2Z8S)
YESW_BACSU
[Raw transfer]
-
SUGAR_A_3(2Z8S)
YESW_BACSU
[Raw transfer]
-
GOL_A_12(4CAG)
?
[Raw transfer]



MPD_B_(2Z8R)
YESW_BACSU
[Raw transfer]



RAM_A_13(2ZUX)
YESW_BACSU
[Raw transfer]



MPD_A_25(2Z8R)
YESW_BACSU
[Raw transfer]



MPD_A_25(2Z8R)
YESW_BACSU
[Raw transfer]



RAM_A_14(2ZUX)
YESW_BACSU
[Raw transfer]



RAM_A_16(2ZUX)
YESW_BACSU
[Raw transfer]
1 PsiBlast_PDB 74.44100% -40 - C7 -2ZUY - YESX_BACSU -
31 HHSearch 73.8599% -40 - C7 -2ZUY - YESX_BACSU -
32 HHSearch 71.6368% -32 * C7 *2ZUX 3.6 YESW_BACSU
2 PsiBlast_PDB 71.3968% -30 - C7 -4CAG 3.8 ?
5 PsiBlast_PDB 71.3267% -32 - C7 -2ZUX 3.7 YESW_BACSU
18 PsiBlast_CBE 71.2367% -31 - C7 -2ZUX - YESW_BACSU -
21 Fugue 71.2168% -32 - C7 -2Z8R 2.8 YESW_BACSU
20 PsiBlast_CBE 70.9967% -30 - C7 -2Z8R 5.9 YESW_BACSU
3 PsiBlast_PDB 70.9867% -32 - C7 -2Z8R 2.8 YESW_BACSU
19 PsiBlast_CBE 70.9467% -31 - C7 -2Z8S 3.6 YESW_BACSU
4 PsiBlast_PDB 70.2867% -31 - C7 -2Z8S 3.4 YESW_BACSU
15 PsiBlast_PDB 34.4845%-145 - C9 -4A7Z - AUD_PHACH -
14 PsiBlast_PDB 32.6045%-151 * C9 *4A7Y - AUD_PHACH -
13 PsiBlast_PDB 32.1845%-143 - C9 -4A7K - AUD_PHACH -
24 Fugue 28.9713% -70 - C7 -2BWR - ? -
25 Fugue 28.8919% -44 - C7 -5CVL - WDR48_HUMAN -
10 PsiBlast_PDB 28.5637%-188 - C8 -1KUG - -
33 HHSearch 27.0617% -34 - C7 -2ZUX - YESW_BACSU -
8 PsiBlast_PDB 26.5537%-175 - C8 -1KUI - -
9 PsiBlast_PDB 26.5137%-177 - C8 -1KUK - -