@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu08790: (2016-06-13 )
MQNNSVQQANISIMSSFSGSKKVYVEGSSSDIQVPMREIALSPTTGSFGEEENAPVRVYDTSGPYTDPEVTINIQEGLKPLRQKWITERGDVEEYEGRAIKPEDNGYKKAKPNVSYPGLKRKPLRAKAGQNVTQMHYAKKGIITPEMEFIAIREHVSPEFVRDEVASGRAIIPSNINHPESEPMIIGRNFHVKINANIGNSAVTSSIEEEVEKMTWAIRWGADTMMDLSTGKDIHTTREWIIRNCPVPVGTVPIYQALEKVNGVAEDLTWEIYRDTLIEQAEQGVDYFTIHAGVLLRYVPLTAKRTTGIVSRGGAIMAQWCLAHHQESFLYTHFEEICEIMKMYDIAFSLGDGLRPGSIADANDEAQFAELETLGELTQIAWKHDVQVMIEGPGHVPMHKIKENVDKQMDICKEAPFYTLGPLTTDIAPGYDHITSAIGAAMIGWYGTAMLCYVTPKEHLGLPNRDDVREGVITYKIAAHAADLAKGHPGAQIRDDALSKARFEFRWRDQFNLSLDPERALEYHDETLPAEGAKTAHFCSMCGPKFCSMRISQDIRDYAKKNDLSEAEAINKGLKEKAKEFVDTGSNLYQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

IRN_A_4(4S26)
THIC_ARATH
[Raw transfer]



AIR_A_3(4S28)
THIC_ARATH
[Raw transfer]



AIR_A_3(4S27)
THIC_ARATH
[Raw transfer]



SAH_A_4(4S25)
THIC_ARATH
[Raw transfer]



SAH_A_5(4S26)
THIC_ARATH
[Raw transfer]



SAH_A_4(4S28)
THIC_ARATH
[Raw transfer]



SAH_B_11(4S26)
THIC_ARATH
[Raw transfer]



IRN_A_3(4S25)
THIC_ARATH
[Raw transfer]



IRN_A_2(4S29)
THIC_ARATH
[Raw transfer]



5AD_A_4(4S27)
THIC_ARATH
[Raw transfer]
3 PsiBlast_PDB 79.7565% -43 - C3 -4S2A - THIC_CAUCR -
25 Fugue 76.8169% -51 - C3 -3EPO - THIC_CAUCR -
36 HHSearch 76.3768% -50 * C3 *4S28 - THIC_ARATH -
35 HHSearch 75.8767% -51 - C3 -3EPO - THIC_CAUCR -
9 PsiBlast_PDB 75.5064% -55 - C3 -4S28 6.4 THIC_ARATH
17 PsiBlast_CBE 75.4265% -53 - C3 -3EPO - THIC_CAUCR -
8 PsiBlast_PDB 75.1564% -54 - C3 -4S27 6.5 THIC_ARATH
18 PsiBlast_CBE 75.1065% -51 - C3 -3EPN - THIC_CAUCR -
4 PsiBlast_PDB 75.0563% -54 - C3 -3EPM - THIC_CAUCR -
2 PsiBlast_PDB 74.9665% -53 - C3 -3EPO - THIC_CAUCR -
6 PsiBlast_PDB 74.7564% -54 - C3 -4S25 6.6 THIC_ARATH
7 PsiBlast_PDB 74.6964% -54 - C3 -4S26 6.2 THIC_ARATH
19 PsiBlast_CBE 74.3564% -56 - C3 -4S26 5.1 THIC_ARATH
1 PsiBlast_PDB 74.3165% -52 - C3 -3EPN - THIC_CAUCR -
10 PsiBlast_PDB 71.3164% -51 - C3 -4S29 6.6 THIC_ARATH
5 PsiBlast_PDB 70.9164% -51 - C3 -4N7Q - THIC_ARATH -
46 HHSearch 33.6415%-109 - C3 -2YCI - ? -
27 Fugue 33.3118% -59 - C4 -4Q86 - YCAO_ECOLI -
42 HHSearch 32.7911%-165 - C3 -2H9A - ? -
30 Fugue 32.2122% -51 - C3 -3V86 - ? -