@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu12320: (2016-06-19 )
MKTITIAAEEAKELVWQKLDGAGLNERDAEKVADVLVHADLRNVHSHGVLHTEHYVNRLLAGGINPGAQPVFKETGPVTGVLDGDDGFGHVNCDMAMDHAIDMAKKKGVGMVTAVNSSHCGALSYFVQKAADEKLIGMAMTHTDSIVVPFGGRTPILGTNPIAYGVPAKHKKPFILDMATSKVAFGKILQAREEGKEIPEGWGVDENGEAVTDPDKVVSLSTFGGPKGYGLSIVVDVFSGLLAGAAFGPHIAKMYNGLDQKRKLGHYVCAINPSFFTDWDTFLEQMDAMIDELQQSPPAVGFERVYVPGEIEQLHEERNKKNGISIARSVYEFLKSR

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAI_B_4(4H8A)
ALLD_ECOLI
[Raw transfer]



NDP_A_2(1V9N)
MDH_PYRHO
[Raw transfer]



NAI_A_3(4FJU)
?
[Raw transfer]



NAI_B_5(4FJU)
?
[Raw transfer]



NDP_A_2(1V9N)
MDH_PYRHO
[Raw transfer]



NAI_A_3(4H8A)
ALLD_ECOLI
[Raw transfer]



NAI_A_3(4H8A)
ALLD_ECOLI
[Raw transfer]



FMT_A_5(1X0A)
?
[Raw transfer]



EDO_A_9(1VBI)
?
[Raw transfer]



EDO_A_9(1VBI)
?
[Raw transfer]



GLV_A_4(4FJU)
?
[Raw transfer]



EDO_A_21(2G8Y)
YBIC_ECOLI
[Raw transfer]



EDO_A_20(2G8Y)
YBIC_ECOLI
[Raw transfer]
3 PsiBlast_PDB 84.4940% -83 - C8 -4FJU 6.5 ?
2 PsiBlast_PDB 84.0140% -85 - C8 -4FJS - ? -
1 PsiBlast_PDB 83.8640% -81 - C8 -4H8A 6.7 ALLD_ECOLI
4 PsiBlast_PDB 83.4239% -84 - C8 -1XRH - ALLD_ECOLI -
27 HHSearch 83.0240% -80 - C8 -4H8A 6.7 ALLD_ECOLI
28 HHSearch 81.5039% -67 * C8 *1VBI 3.0 ?
33 HHSearch 81.4739% -68 - C8 -2X06 - COMC_METJA -
29 HHSearch 80.0235% -61 - C8 -3I0P - ? -
35 HHSearch 79.6839% -88 - C8 -1V9N 5.2 MDH_PYRHO
7 PsiBlast_PDB 79.6139% -65 - C8 -2X06 - COMC_METJA -
20 PsiBlast_CBE 78.6440% -76 - C8 -4H8A 6.8 ALLD_ECOLI
6 PsiBlast_PDB 78.5341% -65 - C8 -1X0A 3.3 ?
9 PsiBlast_PDB 78.4534% -63 - C8 -3I0P - ? -
5 PsiBlast_PDB 78.1241% -62 - C8 -1VBI 3.0 ?
21 PsiBlast_CBE 78.0540% -75 - C8 -4FJU 5.9 ?
8 PsiBlast_PDB 77.4936% -86 - C8 -1V9N 5.3 MDH_PYRHO
34 HHSearch 76.8931% -73 - C8 -1Z2I - ? -
10 PsiBlast_PDB 76.6332% -73 - C8 -1Z2I - ? -
23 PsiBlast_CBE 76.2532% -72 - C8 -1Z2I - ? -
22 PsiBlast_CBE 76.1432% -71 - C8 -1Z2I - ? -
15 PsiBlast_PDB 66.0531% -71 - C8 -2G8Y 2.9 YBIC_ECOLI