@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu22840: (2016-07-05 )
MGKPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASENHSLRVQTNVLNDVIMDAVAMNPTPTHNGSRLKIYYATQVSVKPPSFVVFVNDPELMHFSYERFLENRIRDAFGFEGTPIKIFARARK

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_4(2HJG)
DER_BACSU
[Raw transfer]




GDP_A_3(4DCU)
DER_BACSU
[Raw transfer]




GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]




GNP_A_4(3R9W)
ERA_AQUAE
[Raw transfer]




GDP_A_3(4DCU)
DER_BACSU
[Raw transfer]




GNP_A_4(3IEV)
ERA_AQUAE
[Raw transfer]




GNP_A_5(3R9X)
ERA_AQUAE
[Raw transfer]




GDP_B_10(3IEU)
ERA_ECOLI
[Raw transfer]




GDP_A_3(3IEU)
ERA_ECOLI
[Raw transfer]




GDP_B_8(4KYU)
DER_BACSU
[Raw transfer]




GDP_C_3(2DYK)
?
[Raw transfer]




GDP_C_3(2DYK)
?
[Raw transfer]




GDP_A_3(4KYU)
DER_BACSU
[Raw transfer]




GDP_A_3(4KYU)
DER_BACSU
[Raw transfer]




GDP_D_4(2DYK)
?
[Raw transfer]




1 PsiBlast_PDB 84.68100%-147 - C1 -4DCS - DER_BACSU -
4 PsiBlast_PDB 83.9397%-146 - C1 -2HJG 6.8 DER_BACSU
3 PsiBlast_PDB 83.75100%-150 - C1 -4DCV - DER_BACSU -
71 HHSearch 83.39100%-145 - C1 -4DCU 7.1 DER_BACSU
2 PsiBlast_PDB 83.17100%-145 - C1 -4DCU 7.1 DER_BACSU
21 PsiBlast_CBE 51.87100%-155 - C1 -4KYU 7.6 DER_BACSU
76 HHSearch 50.74100%-130 - C1 -4KYU 6.4 DER_BACSU
5 PsiBlast_PDB 50.34100%-131 - C1 -4KYU 6.4 DER_BACSU
69 HHSearch 49.9038% 9 - C1 -1MKY - DER_THEMA -
7 PsiBlast_PDB 49.8037% 5 - C1 -1MKY - DER_THEMA -
70 HHSearch 48.1740% -27 - C1 -3J8G - DER_ECOLI -
6 PsiBlast_PDB 45.2838% -16 - C1 -3J8G - DER_ECOLI -
84 HHSearch 42.6544%-127 - C1 -2DYK 7.5 ?
22 PsiBlast_CBE 42.1643%-136 - C1 -2DYK 7.9 ?
8 PsiBlast_PDB 42.1143%-133 - C1 -2DYK 7.5 ?
89 HHSearch 40.9928%-150 - C1 -3GEH - MNME_NOSS1 -
57 PsiBlast_CBE 40.2172%-246 - C1 -2DBY - ? -
88 HHSearch 39.3431%-136 - C1 -1XZP - MNME_THEMA -
81 HHSearch 38.6926%-145 - C1 -1EGA - ERA_ECOLI -
83 HHSearch 38.6331%-160 - C1 -3GEH - MNME_NOSS1 -
82 HHSearch 31.3532% 0 - C1 -3IEV 9.8 ERA_AQUAE
23 PsiBlast_CBE 30.7632% -58 - C1 -3IEU 8.1 ERA_ECOLI
15 PsiBlast_PDB 30.2532% -58 - C1 -3IEU 8.1 ERA_ECOLI
18 PsiBlast_PDB 28.8932% 2 - C1 -3IEV 9.8 ERA_AQUAE
16 PsiBlast_PDB 28.2832% 1 - C1 -3R9W 9.2 ERA_AQUAE
17 PsiBlast_PDB 27.6032% 8 - C1 -3R9X 9.0 ERA_AQUAE