@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu30850: (2016-07-21 )
MIKKAIIPAGGFGTRNLPVTKVIPKEMFPVGSKPVIHYLVEELKESGIEDILMVVSSHKNLIVDYFDSSLALEAFLASKNKLHLLREHPIPDIRIHYVRQPYAKGLGDAISFGKQFAGGEPFAVVLPDDLIFSANQPALGQLIEAYTKYQSSVIGLKETKTEDLHHYGVIKGEPVEKGLYRIQDIVEKPKQNPPSHFAAAGRYIFTPDIFNELEALEADSGGEVQVTDAIKASLGACTVYGKLLEGERYDIGLQKDYLKLIYDMLKTEKNPQ

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UPG_A_5(3JUK)
?
[Raw transfer]



UPG_B_9(3JUK)
?
[Raw transfer]



UPG_A_5(3JUK)
?
[Raw transfer]



UPG_C_13(3JUK)
?
[Raw transfer]



UPG_A_2(5I1F)
?
[Raw transfer]



GUD_A_13(2PA4)
?
[Raw transfer]



GUD_A_13(2PA4)
?
[Raw transfer]



UPG_D_17(3JUK)
?
[Raw transfer]



UPG_A_2(5I1F)
?
[Raw transfer]



TTP_E_5(2GGQ)
?
[Raw transfer]



THM_A_15(1H5R)
RMLA1_ECOLI
[Raw transfer]
53 HHSearch 73.7743% -17 - C1 -3JUK 7.7 ?
57 HHSearch 73.2441% -15 - C1 -5I1F 6.5 ?
1 PsiBlast_PDB 71.6543% -10 - C1 -3JUJ - ? -
2 PsiBlast_PDB 71.5043% -9 - C1 -3JUK 7.7 ?
3 PsiBlast_PDB 71.4141% -6 - C1 -5I1F 6.5 ?
21 PsiBlast_CBE 69.7543% -6 - C1 -3JUK 7.8 ?
23 PsiBlast_CBE 69.7143% -7 - C1 -3JUK 7.5 ?
22 PsiBlast_CBE 69.6643% -9 - C1 -3JUK 7.9 ?
27 PsiBlast_CBE 66.6737% -23 - C1 -2UX8 - ? -
29 PsiBlast_CBE 65.4637% -21 - C1 -2UX8 - ? -
25 PsiBlast_CBE 65.1937% -17 * C1 *2UX8 - ? -
26 PsiBlast_CBE 64.7137% -21 - C1 -2UX8 - ? -
30 PsiBlast_CBE 64.4437% -25 - C1 -2UX8 - ? -
28 PsiBlast_CBE 64.3337% -21 - C1 -2UX8 - ? -
13 PsiBlast_PDB 62.1128%-116 - C1 -4HO3 - ? -
12 PsiBlast_PDB 61.9228%-115 - C1 -4HO2 - ? -
4 PsiBlast_PDB 61.8829% -14 - C1 -2PA4 6.8 ?
41 Fugue 61.0126% -90 - C1 -1FXO - ? -
18 PsiBlast_PDB 60.6828%-113 - C1 -4HO9 - ? -
52 HHSearch 60.5230% -8 - C1 -2PA4 6.8 ?
10 PsiBlast_PDB 56.7132%-114 - C1 -2GGQ 5.3 ?