@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu34350: (2016-07-28 )
MIIALDTYLVLNSVIAGYQFLKDSYQFYDSGALLLTAVSLLLSYHVCAFLFNQYKQVWTYTGLGELIVLLKGITLSAAVTGVIQYAVYHTMFFRLLTACWVLQLLSIGGTRILSRVLNESIRKKRCASSRALIIGAGSGGTLMVRQLLSKDEPDIIPVAFIDDDQTKHKLEIMGLPVIGGKESIMPAVQKLKINYIIIAIPSLRTHELQVLYKECVRTGVSIKIMPHFDEMLLGTRTAGQIRDVKAEDLLGRKPVTLDTSEISNRIKGKTVLVTGAGGSIGSEICRQISAFQPKEIILLGHGENSIHSIYTELNGRFGKHIVFHTEIADVQDRDKMFTLMKKYEPHVVYHAAAHKHVPLMEHNPEEAVKNNIIGTKNVAEAADMSGTETFVLISSDKAVNPANVMGATKRFAEMIIMNLGKVSRTKFVAVRFGNVLGSRGSVIPIFKKQIEKGGPVTVTHPAMTRYFMTIPEASRLVIQAGALAKGRQIFVLDMGEPVKIVDLAKNLIHLSGYTTEQVPIEFTGIRPGEKMYEELLNKNEVHAEQIFPKIHIGKAVDGDWPVLMRFIEDFHELPEADLRARLFAAINTSEEMTAASVH

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_A_3(2GN4)
PSEB_HELPY
[Raw transfer]




NDP_B_5(2GN4)
PSEB_HELPY
[Raw transfer]




NDP_A_3(2GN4)
PSEB_HELPY
[Raw transfer]




NAP_A_7(2GN8)
PSEB_HELPY
[Raw transfer]




NAP_B_13(2GN8)
PSEB_HELPY
[Raw transfer]




NAP_B_16(2GNA)
PSEB_HELPY
[Raw transfer]




NAP_B_13(2GN6)
PSEB_HELPY
[Raw transfer]




NAP_A_13(2GNA)
PSEB_HELPY
[Raw transfer]




NAP_A_7(2GN6)
PSEB_HELPY
[Raw transfer]




UDZ_B_20(3W1V)
?
[Raw transfer]




NAP_B_13(2GN9)
PSEB_HELPY
[Raw transfer]




NAP_A_7(2GN9)
PSEB_HELPY
[Raw transfer]




NAP_A_2(4G5H)
?
[Raw transfer]




UDZ_A_11(3W1V)
?
[Raw transfer]




GDU_A_7(2GNA)
PSEB_HELPY
[Raw transfer]




GDU_B_10(2GNA)
PSEB_HELPY
[Raw transfer]




9 PsiBlast_PDB 88.5136% 0 - C- -4J2O - ? -
8 PsiBlast_PDB 83.5735% 0 - C- -3VVC - ? -
6 PsiBlast_PDB 73.0336% -70 - C1 -3W1V 7.6 ?
7 PsiBlast_PDB 72.3236% -69 - C1 -4G5H 9.1 ?
26 PsiBlast_CBE 71.4336% -66 - C1 -3W1V 7.3 ?
46 Fugue 71.0231% -6 - C1 -2GN4 11.5 PSEB_HELPY
4 PsiBlast_PDB 66.6434% -24 - C1 -2GN9 11.0 PSEB_HELPY
23 PsiBlast_CBE 66.3534% -26 - C1 -2GN8 10.9 PSEB_HELPY
5 PsiBlast_PDB 65.4734% -21 - C1 -2GNA 9.9 PSEB_HELPY
1 PsiBlast_PDB 65.2234% -17 - C1 -2GN4 11.5 PSEB_HELPY
25 PsiBlast_CBE 65.1534% -21 - C1 -2GN4 11.3 PSEB_HELPY
2 PsiBlast_PDB 65.0134% -22 - C1 -2GN6 10.1 PSEB_HELPY
3 PsiBlast_PDB 64.9434% -24 - C1 -2GN8 11.5 PSEB_HELPY
21 PsiBlast_CBE 64.8234% -21 - C1 -2GNA 10.5 PSEB_HELPY
24 PsiBlast_CBE 64.7334% -23 - C1 -2GN6 11.2 PSEB_HELPY
64 HHSearch 63.5425% 6 - C1 -3PVZ - ? -
22 PsiBlast_CBE 62.7834% -24 - C1 -2GN9 10.0 PSEB_HELPY
66 HHSearch 58.8522% -66 - C1 -4WOK - ? -
13 PsiBlast_PDB 57.6422% -57 - C1 -4ZRN - ? -
10 PsiBlast_PDB 57.1029% -23 - C1 -4TQG - ? -