@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu36230: (2016-07-31 )
MNITVIGTGYVGLVTGVSLSEIGHHVTCIDIDAHKIDEMRKGISPIFEPGLEELMRKNTADGRLNFETSYEKGLAQADIIFIAVGTPQKSDGHANLEQITDAAKRIAKHVKRDTVVVTKSTVPVGTNDLINGLITEHLAEPVSISVASNPEFLREGSAIYDTFHGDRIVIGTADEKTANTLEELFRPFQIPIYQTDIRSAEMIKYASNAFLATKISFINEISNICEKVGADIEAVAYGMGQDKRIGSQFLKAGIGYGGSCFPKDTNALVQIAGNVEHDFELLKSVIKVNNNQQAMLVDKALNRLGGVTGKTIALLGLSFKPNTDDMREAPSIVIADRLAALDARIRAYDPIAVSHAKHVLPQAVEYKETIEEAVKGSDAVMILTDWADIKQFPLAAYQDLMETPLIFDGRNCYTLDEALAAGVEYYSVGRKAVVPSGAIQ

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UPG_A_2(3VTF)
?
[Raw transfer]



UPG_A_2(3VTF)
?
[Raw transfer]



UGA_A_6(1DLJ)
UDG_STRPY
[Raw transfer]



NAD_A_3(4A7P)
?
[Raw transfer]



NAD_A_3(4A7P)
?
[Raw transfer]



UGA_A_3(3PJG)
?
[Raw transfer]



GOL_A_9(1DLJ)
UDG_STRPY
[Raw transfer]



NAD_A_3(4XR9)
?
[Raw transfer]



GOL_A_8(1DLJ)
UDG_STRPY
[Raw transfer]
1 PsiBlast_PDB 93.4544% 0 - C- -3GG2 - ? -
21 PsiBlast_CBE 91.2244% 0 - C- -3GG2 - ? -
22 PsiBlast_CBE 90.2344% 0 - C- -3GG2 - ? -
108 HHSearch 79.2844% -30 - C1 -3GG2 - ? -
31 PsiBlast_CBE 78.1045% -21 - C1 -2Y0D - ? -
26 PsiBlast_CBE 77.8245% -25 - C1 -2Y0C - ? -
30 PsiBlast_CBE 77.7345% -20 - C1 -2Y0D - ? -
29 PsiBlast_CBE 77.7145% -19 - C1 -2Y0D - ? -
4 PsiBlast_PDB 77.6645% -19 - C1 -2Y0D - ? -
28 PsiBlast_CBE 77.3445% -25 - C1 -2Y0C - ? -
27 PsiBlast_CBE 77.2445% -23 - C1 -2Y0C - ? -
25 PsiBlast_CBE 77.2045% -23 - C1 -2Y0E - ? -
102 HHSearch 76.7246% -16 - C1 -2Y0C - ? -
23 PsiBlast_CBE 76.2345% -23 - C1 -2Y0E - ? -
5 PsiBlast_PDB 76.0445% -12 - C1 -4A7P 8.9 ?
2 PsiBlast_PDB 75.8045% -19 - C1 -2Y0E - ? -
3 PsiBlast_PDB 75.4945% -17 - C1 -2Y0C - ? -
24 PsiBlast_CBE 75.2245% -24 - C1 -2Y0E - ? -
103 HHSearch 74.9846% -10 - C1 -4A7P 8.9 ?
106 HHSearch 74.5839% -41 - C1 -3VTF 7.0 ?
6 PsiBlast_PDB 71.8939% -11 - C1 -3VTF 7.0 ?
93 PsiBlast_CBE 53.8531% 10 - C1 -3PJG 3.3 ?