@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu39860: (2016-08-06 )
MEQQVKDDIQRVFQLQKKQQKALRASTAEQRREKLQRFLDSVIAHEEEIIEAIRKDVRKPYHEVKKAEIEGTKKAIRDNMNNLEQWMAPKEVGSSLSPDANGILMYEPKGVTLILGPWNYPFMLTMAPLAASLAAGNSAIVKLSDFTMNTSNIAAKVIRDAFDEKEVAIFEGEVEVATELLDQPFDHIFFTGSTNVGKIVMTAAAKHLASVTLELGGKSPTIIDSEYDLMDAAKKIAVGKFVNAGQTCIAPDYLFIKKDVQDRFAGILQTVVNAGFMEDDHTPDRSKFTQIVNDRNFNRVKDLFDDAIERGAEVVFGGVFDASDRTISPTVLKNVTPDMKIMQEEIFASILPMMNYEDIDEVIDYVNDRDKPLALYVFSKNQDLIDNVLQHTTSGNAAINDVVVHFSDVNLPFGGVNTSGIGSYHGVYGFKEFSHEKGVFIQAAE

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_A_3(1AD3)
AL3A1_RAT
[Raw transfer]




NAI_A_2(4WB9)
AL1A1_HUMAN
[Raw transfer]




NAD_B_6(5AC0)
AL1A1_SHEEP
[Raw transfer]




TXE_A_4(5AC2)
AL1A1_HUMAN
[Raw transfer]




1VL_B_7(4L1O)
AL3A1_HUMAN
[Raw transfer]




NAD_B_4(1AD3)
AL3A1_RAT
[Raw transfer]




NAD_A_3(5AC0)
AL1A1_SHEEP
[Raw transfer]




I1E_A_6(3SZB)
AL3A1_HUMAN
[Raw transfer]




1VL_A_3(4L1O)
AL3A1_HUMAN
[Raw transfer]




I1E_B_10(3SZB)
AL3A1_HUMAN
[Raw transfer]




1 PsiBlast_PDB 89.0041% -21 - C- -4QGK - AL3A2_HUMAN -
86 HHSearch 88.5838% -24 - C3 -3SZA - AL3A1_HUMAN -
3 PsiBlast_PDB 88.1339% -27 - C3 -3SZB 2.6 AL3A1_HUMAN
2 PsiBlast_PDB 87.5239% -26 - C3 -3SZA - AL3A1_HUMAN -
24 PsiBlast_CBE 87.4639% -27 - C3 -4L1O 2.8 AL3A1_HUMAN
27 PsiBlast_CBE 87.3939% -26 - C3 -4H80 - AL3A1_HUMAN -
6 PsiBlast_PDB 87.2339% -26 - C3 -4L1O 2.4 AL3A1_HUMAN
5 PsiBlast_PDB 86.9939% -29 - C3 -4L2O - AL3A1_HUMAN -
22 PsiBlast_CBE 86.8939% -29 - C3 -4L2O - AL3A1_HUMAN -
33 PsiBlast_CBE 86.8839% -26 - C3 -3SZA - AL3A1_HUMAN -
23 PsiBlast_CBE 86.7739% -28 - C3 -4L2O - AL3A1_HUMAN -
28 PsiBlast_CBE 86.7539% -26 - C3 -4H80 - AL3A1_HUMAN -
21 PsiBlast_CBE 86.5739% -28 - C3 -4L2O - AL3A1_HUMAN -
29 PsiBlast_CBE 86.4939% -27 - C3 -4H80 - AL3A1_HUMAN -
26 PsiBlast_CBE 86.2139% -26 - C3 -4H80 - AL3A1_HUMAN -
32 PsiBlast_CBE 86.1839% -26 - C3 -3SZB 3.3 AL3A1_HUMAN
25 PsiBlast_CBE 86.0239% -25 - C3 -4H80 - AL3A1_HUMAN -
31 PsiBlast_CBE 85.7939% -26 - C3 -4H80 - AL3A1_HUMAN -
30 PsiBlast_CBE 85.7639% -25 - C3 -4H80 - AL3A1_HUMAN -
4 PsiBlast_PDB 85.6839% -26 - C3 -4H80 - AL3A1_HUMAN -
7 PsiBlast_PDB 85.1139% -30 - C3 -1AD3 3.7 AL3A1_RAT
34 PsiBlast_CBE 84.2939% -28 - C3 -1AD3 3.8 AL3A1_RAT
45 PsiBlast_CBE 65.1532% 4 - C3 -5AC0 6.3 AL1A1_SHEEP
44 PsiBlast_CBE 64.6632% 3 - C3 -5AC0 3.4 AL1A1_SHEEP
18 PsiBlast_PDB 62.7131% 3 - C3 -5AC2 3.6 AL1A1_HUMAN
16 PsiBlast_PDB 62.1431% 4 - C3 -4WB9 4.5 AL1A1_HUMAN