@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0005: (2016-04-18 )
MGKNEARRSALAPDHGTVVCDPLRRLNRMHATPEESIRIVAAQKKKAQDEYGAASITILEGLEAVRKRPGMYIGSTGERGLHHLIWEVVDNAVDEAMAGYATTVNVVLLEDGGVEVADDGRGIPVATHASGIPTVDVVMTQLHAGGKFDSDAYAISGGLHGVGVSVVNALSTRLEVEIKRDGYEWSQVYEKSEPLGLKQGAPTKKTGSTVRFWADPAVFETTEYDFETVARRLQEMAFLNKGLTINLTDERVTQDEVVDEVVSDVAEAPKSASERAAESTAPHKVKSRTFHYPGGLVDFVKHINRTKNAIHSSIVDFSGKGTGHEVEIAMQWNAGYSESVHTFANTINTHEGGTHEEGFRSALTSVVNKYAKDRKLLKDKDPNLTGDDIREGLAAVISVKVSEPQFEGQTKTKLGNTEVKSFVQKVCNEQLTHWFEANPTDAKVVVNKAVSSAQARIAARKARELVRRKSATDIGGLPGKLADCRSTDPRKSELYVVEGDSAGGSAKSGRDSMFQAILPLRGKIINVEKARIDRVLKNTEVQAIITALGTGIHDEFDIGKLRYHKIVLMADADVDGQHISTLLLTLLFRFMRPLIENGHVFLAQPPLYKLKWQRSDPEFAYSDRERDGLLEAGLKAGKKINKEDGIQRYKGLGEMDAKELWETTMDPSVRVLRQVTLDDAAAADELFSILMGEDVDARRSFITRNAKDVRFLDV

Atome Classification :

(42 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




DOO_A_2(4K4O)
GYRB_ENTFA
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_6(1EI1)
GYRB_ECOLI
[Raw transfer]




ANP_A_7(1S16)
PARE_ECOLI
[Raw transfer]




ANP_A_2(4WUB)
GYRB_ECOLI
[Raw transfer]




DOO_A_5(4KQV)
PARE_FRATH
[Raw transfer]




DOO_B_12(4KQV)
PARE_FRATH
[Raw transfer]




RLI_A_3(4DUH)
GYRB_ECOLI
[Raw transfer]




NOV_A_3(1KIJ)
GYRB_THET8
[Raw transfer]




19X_B_4(4HY1)
PARE_FRATH
[Raw transfer]




CJC_A_3(4HYM)
PARE_FRATH
[Raw transfer]




B5U_B_5(4B6C)
GYRB_MYCS2
[Raw transfer]




NOV_A_3(1KIJ)
GYRB_THET8
[Raw transfer]




RWX_B_8(4BAE)
GYRB_MYCS2
[Raw transfer]




NOV_A_5(4URO)
GYRB_STAAU
[Raw transfer]




1EU_A_3(3FV5)
PARE_ECOLI
[Raw transfer]




NOV_B_4(1KIJ)
GYRB_THET8
[Raw transfer]




EVO_A_3(5CPH)
?
[Raw transfer]




19Y_A_3(4HXZ)
PARE_FRATH
[Raw transfer]




4S4_A_2(4ZVI)
GYRB_ECOLI
[Raw transfer]




111 HHSearch 82.4250% -88 - C4 -4I3H - ? -
3 PsiBlast_PDB 81.6146% -90 - C4 -4I3H - ? -
4 PsiBlast_PDB 81.4846% -92 - C4 -4JUO - PARE_STRPN -
40 PsiBlast_CBE 76.68100% -75 - C3 -3ZKB - GYRB_MYCTU -
42 PsiBlast_CBE 76.17100% -74 - C3 -3ZKB - GYRB_MYCTU -
24 PsiBlast_CBE 76.13100% -81 - C3 -3ZKD - GYRB_MYCTU -
23 PsiBlast_CBE 76.00100% -73 - C3 -3ZKD - GYRB_MYCTU -
27 PsiBlast_CBE 75.97100% -74 - C3 -3ZKD - GYRB_MYCTU -
41 PsiBlast_CBE 75.49100% -76 - C3 -3ZKB - GYRB_MYCTU -
28 PsiBlast_CBE 74.83100% -74 - C3 -3ZKD - GYRB_MYCTU -
26 PsiBlast_CBE 74.81100% -77 - C3 -3ZKD - GYRB_MYCTU -
116 HHSearch 74.26100% -77 - C3 -3ZKB - GYRB_MYCTU -
1 PsiBlast_PDB 74.26100% -77 - C3 -3ZKB - GYRB_MYCTU -
2 PsiBlast_PDB 74.10100% -74 - C3 -3ZKD - GYRB_MYCTU -
25 PsiBlast_CBE 74.08100% -77 - C3 -3ZKD - GYRB_MYCTU -
21 PsiBlast_CBE 72.72100% -82 - C3 -3ZM7 - GYRB_MYCTU -
22 PsiBlast_CBE 72.68100% -83 - C3 -3ZM7 - GYRB_MYCTU -
29 PsiBlast_CBE 72.20100% -75 - C3 -3ZKD - GYRB_MYCTU -
13 PsiBlast_PDB 62.47100% -92 - C4 -5BTN - ? -
5 PsiBlast_PDB 62.33100% -95 - C4 -5BS8 - ? -
119 HHSearch 59.9246% -73 - C3 -1KIJ 6.3 GYRB_THET8
120 HHSearch 59.8450% -67 - C3 -4WUB 9.9 GYRB_ECOLI
136 Fugue 59.6849% -63 - C3 -1EI1 7.7 GYRB_ECOLI
60 PsiBlast_CBE 59.2243% -72 - C3 -1KIJ 7.1 GYRB_THET8
61 PsiBlast_CBE 58.9543% -76 - C3 -1KIJ 6.3 GYRB_THET8
137 Fugue 58.7549% -65 - C3 -1EI1 7.7 GYRB_ECOLI
57 PsiBlast_CBE 58.3945% -74 - C3 -4ZVI 5.7 GYRB_ECOLI
122 HHSearch 55.7637% -71 - C3 -1S16 9.7 PARE_ECOLI
67 PsiBlast_CBE 54.4436% -71 - C3 -4KQV 6.2 PARE_FRATH
68 PsiBlast_CBE 53.6136% -70 - C3 -4HYM 6.8 PARE_FRATH
70 PsiBlast_CBE 53.0636% -71 - C3 -4HXZ 5.0 PARE_FRATH
58 PsiBlast_CBE 48.1379% -84 - C3 -4BAE 7.5 GYRB_MYCS2
135 HHSearch 43.0045% -80 * C3 *3FV5 5.7 PARE_ECOLI
131 HHSearch 41.9053% -71 - C3 -4DUH 6.6 GYRB_ECOLI
133 HHSearch 41.5154% -70 - C3 -4K4O 7.3 GYRB_ENTFA
59 PsiBlast_CBE 41.3372% -68 - C3 -4B6C 6.8 GYRB_MYCS2
130 HHSearch 41.0754% -65 - C3 -4URO 6.1 GYRB_STAAU
134 HHSearch 40.4551% -63 - C3 -5CPH 3.5 ?
69 PsiBlast_CBE 39.5236% -80 - C3 -4HY1 6.3 PARE_FRATH
141 Fugue 37.6948% -76 - C3 -1EI1 7.1 GYRB_ECOLI
66 PsiBlast_CBE 37.1936% -71 - C3 -4KQV 6.5 PARE_FRATH
138 Fugue 30.7647% -40 - C3 -1EI1 Error GYRB_ECOLI