@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0873: (2016-04-26 )
MAQQTQVTEEQARALAEESRESGWDKPSFAKELFLGRFPLGLIHPFPKPSDAEEARTEAFLVKLREFLDTVDGSVIERAAQIPDEYVKGLAELGCFGLKIPSEYGGLNMSQVAYNRVLMMVTTVHSSLGALLSAHQSIGVPEPLKLAGTAEQKRRFLPRCAAGAISAFLLTEPDVGSDPARMASTATPIDDGQAYELEGVKLWTTNGVVADLLVVMARVPRSEGHRGGISAFVVEADSPGITVERRNKFMGLRGIENGVTRLHRVRVPKDNLIGREGDGLKIALTTLNAGRLSLPAIATGVAKQALKIAREWSVERVQWGKPVGQHEAVASKISFIAATNYALDAVVELSSQMADEGRNDIRIEAALAKLWSSEMACLVGDELLQIRGGRGYETAESLAARGERAVPVEQMVRDLRINRIFEGSSEIMRLLIAREAVDAHLTAAGDLANPKADLRQKAAAAAGASGFYAKWLPKLVFGEGQLPTTYREFGALATHLRFVERSSRKLARNTFYGMARWQASLEKKQGFLGRIVDIGAELFAISAACVRAEAQRTADPVEGEQAYELAEAFCQQATLRVEALFDALWSNTDSIDVRLANDVLEGRYTWLEQGILDQSEGTGPWIASWEPGPSTEANLARRFLTVSPSSEAKL

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_A_4(2UXW)
ACADV_HUMAN
[Raw transfer]



FAD_A_3(3B96)
ACADV_HUMAN
[Raw transfer]



FAD_A_3(2D29)
?
[Raw transfer]



FAD_B_4(2Z1Q)
?
[Raw transfer]



FAD_A_3(2Z1Q)
?
[Raw transfer]



FAD_A_3(2Z1Q)
?
[Raw transfer]



FAD_C_3(2DVL)
?
[Raw transfer]



FAD_B_4(2Z1Q)
?
[Raw transfer]



FDA_A_2(3SF6)
?
[Raw transfer]



FAD_K_11(1JQI)
ACADS_RAT
[Raw transfer]



FAD_D_4(2DVL)
?
[Raw transfer]



MYA_A_2(3B96)
ACADV_HUMAN
[Raw transfer]



TH3_A_5(2UXW)
ACADV_HUMAN
[Raw transfer]



EDO_A_2(2UXW)
ACADV_HUMAN
[Raw transfer]
75 HHSearch 97.3228% -80 - C2 -2UXW - ACADV_HUMAN -
1 PsiBlast_PDB 96.6230% -79 - C2 -2UXW 10.1 ACADV_HUMAN
65 Fugue 96.5528% -79 - C2 -2UXW - ACADV_HUMAN -
2 PsiBlast_PDB 94.9730% -77 - C2 -3B96 9.2 ACADV_HUMAN
77 HHSearch 87.8432% -77 - C2 -2Z1Q 8.8 ?
76 HHSearch 87.2028% -74 - C2 -3OWA - ? -
66 Fugue 85.6430% -65 - C2 -2Z1Q 8.3 ?
31 PsiBlast_CBE 78.3434% -72 - C2 -2D29 - ? -
33 PsiBlast_CBE 76.9334% -73 - C2 -2CX9 - ? -
12 PsiBlast_PDB 76.7834% -72 - C2 -2CX9 - ? -
11 PsiBlast_PDB 76.7134% -71 - C2 -1WS9 - ? -
13 PsiBlast_PDB 76.5734% -70 - C2 -2D29 7.8 ?
32 PsiBlast_CBE 75.7534% -71 - C2 -2CX9 - ? -
10 PsiBlast_PDB 75.6229% -71 - C2 -3OWA - ? -
84 HHSearch 72.7228% -76 - C2 -1RX0 - ACAD8_HUMAN -
3 PsiBlast_PDB 72.6738% -73 - C2 -4N5F - ? -
78 HHSearch 70.4626% -76 - C2 -4IRN - ? -
94 HHSearch 70.3930% -72 - C2 -2PG0 - ? -
23 PsiBlast_CBE 70.3938% -69 - C2 -4M9A - ? -
34 PsiBlast_CBE 70.3732% -73 - C2 -1JQI 9.2 ACADS_RAT
7 PsiBlast_PDB 69.2337% -74 - C2 -2DVL 6.4 ?
24 PsiBlast_CBE 67.8037% -68 - C2 -2Z1Q 8.2 ?
5 PsiBlast_PDB 66.9737% -69 - C2 -2Z1Q 8.6 ?
28 PsiBlast_CBE 66.6837% -72 - C2 -2DVL 9.1 ?
63 PsiBlast_CBE 58.2234% -73 - C2 -3SF6 5.9 ?