@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv1238: (2016-04-29 )
MAEIVLDHVNKSYPDGHTAVRDLNLTIADGEFLILVGPSGCGKTTTLNMIAGLEDISSGELRIAGERVNEKAPKDRDIAMVFQSYALYPHMTVRQNIAFPLTLAKMRKADIAQKVSETAKILDLTNLLDRKPSQLSGGQRQRVAMGRAIVRHPKAFLMDEPLSNLDAKLRVQMRGEIAQLQRRLGTTTVYVTHDQTEAMTLGDRVVVMYGGIAQQIGTPEELYERPANLFVAGFIGSPAMNFFPARLTAIGLTLPFGEVTLAPEVQGVIAAHPKPENVIVGVRPEHIQDAALIDAYQRIRALTFQVKVNLVESLGADKYLYFTTESPAVHSVQLDELAEVEGESALHENQFVARVPAESKVAIGQSVELAFDTARLAVFDADSGANLTIPHRA

Atome Classification :

(43 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]



ANP_J_5(3C41)
?
[Raw transfer]



ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]



ATP_A_6(4YMV)
?
[Raw transfer]



ATP_J_5(4YMU)
?
[Raw transfer]



ATP_A_7(4YMU)
?
[Raw transfer]



ANP_K_6(3C41)
?
[Raw transfer]



ATP_A_5(1L2T)
Y796_METJA
[Raw transfer]



ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]



AGS_B_6(3C4J)
?
[Raw transfer]



ATP_J_5(4YMV)
?
[Raw transfer]



ADP_A_2(4U00)
?
[Raw transfer]



ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]



ADP_B_6(2Q0H)
?
[Raw transfer]



ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]



AGS_A_4(3C4J)
?
[Raw transfer]



ADP_B_6(2OLJ)
?
[Raw transfer]



ADP_A_5(2Q0H)
?
[Raw transfer]



ADP_A_5(2OLJ)
?
[Raw transfer]



AT4_D_8(2OLK)
?
[Raw transfer]



AT4_B_6(2OLK)
?
[Raw transfer]



AT4_A_5(2OLK)
?
[Raw transfer]



AT4_C_7(2OLK)
?
[Raw transfer]
1 PsiBlast_PDB 95.4448%-118 - C1 -2D62 - ? -
2 PsiBlast_PDB 91.8747%-118 - C1 -4TQU - ? -
96 HHSearch 91.5351%-113 - C1 -4TQU - ? -
5 PsiBlast_PDB 91.2347%-119 - C1 -4XTC - ? -
4 PsiBlast_PDB 90.7247%-118 - C1 -4XIG - ? -
3 PsiBlast_PDB 89.4647%-116 - C1 -4TQV - ? -
102 HHSearch 87.8847%-110 - C1 -3RLF - MALK_ECOLI -
98 HHSearch 86.6941%-108 - C1 -2IT1 - ? -
97 HHSearch 85.2946%-114 - C1 -1V43 - ? -
17 PsiBlast_PDB 84.2248%-115 - C1 -3RLF - MALK_ECOLI -
16 PsiBlast_PDB 83.7748%-114 - C1 -3PUX - MALK_ECOLI -
11 PsiBlast_PDB 83.2248%-113 - C1 -3PUY - MALK_ECOLI -
15 PsiBlast_PDB 83.1348%-112 - C1 -3PUW - MALK_ECOLI -
34 PsiBlast_CBE 83.0648%-109 - C1 -2R6G - MALK_ECOLI (first) -
14 PsiBlast_PDB 82.9048%-113 - C1 -3PUV - MALK_ECOLI -
22 PsiBlast_CBE 82.8748%-111 - C1 -3RLF - MALK_ECOLI -
12 PsiBlast_PDB 82.8448%-113 - C1 -3PUZ - MALK_ECOLI -
21 PsiBlast_CBE 82.6148%-111 - C1 -4KI0 - MALK_ECOLI -
100 HHSearch 82.5243%-108 - C1 -2YYZ - ? -
20 PsiBlast_PDB 82.5148%-112 - C1 -4KI0 - MALK_ECOLI -
50 PsiBlast_CBE 62.1738%-100 - C1 -3FVQ 7.1 FBPC_NEIG1
49 PsiBlast_CBE 61.4038% -99 - C1 -3FVQ 7.9 FBPC_NEIG1
55 PsiBlast_CBE 58.5638% -92 - C1 -4U00 6.4 ?
58 PsiBlast_CBE 54.6539% -91 - C1 -3C4J 3.4 ?
78 PsiBlast_CBE 54.2634% -80 - C1 -4YMU 5.1 ?
56 PsiBlast_CBE 54.1739% -91 - C1 -3C41 4.0 ?
71 PsiBlast_CBE 53.5539% -92 - C1 -2OLJ 4.0 ?
69 PsiBlast_CBE 53.4539% -92 - C1 -2OLK 4.0 ?
67 PsiBlast_CBE 53.4039% -91 - C1 -2OLK 4.1 ?
66 PsiBlast_CBE 53.2039% -88 - C1 -2OLK 4.0 ?
60 PsiBlast_CBE 52.9739% -91 - C1 -2Q0H 3.6 ?
59 PsiBlast_CBE 52.9139% -86 - C1 -3C4J 4.8 ?
79 PsiBlast_CBE 52.6034% -80 - C1 -4YMU 4.4 ?
81 PsiBlast_CBE 52.2734% -86 - C1 -1L2T 6.7 Y796_METJA
68 PsiBlast_CBE 51.9939% -86 - C1 -2OLK 3.7 ?
61 PsiBlast_CBE 51.8639% -90 - C1 -2Q0H 3.5 ?
82 PsiBlast_CBE 51.8234% -86 - C1 -3TIF 6.5 Y796_METJA
77 PsiBlast_CBE 51.4034% -80 - C1 -4YMV 4.4 ?
70 PsiBlast_CBE 51.3339% -83 - C1 -2OLJ 3.7 ?
76 PsiBlast_CBE 51.2534% -78 - C1 -4YMV 5.9 ?
80 PsiBlast_CBE 51.1334% -85 - C1 -1L2T 6.7 Y796_METJA
83 PsiBlast_CBE 50.9934% -82 - C1 -3TIF 6.0 Y796_METJA
57 PsiBlast_CBE 50.8039% -85 - C1 -3C41 5.2 ?