@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv2326c: (2016-05-09 )
MCCAVCGPEPGRIGEVTPLGPCPAQHRGGPLRPSELAQASVMAALCAVTAIISVVVPFAAGLALLGTVPTGLLAYRYRLRVLAAATVAAGMIAFLIAGLGGFMGVVHSAYIGGLTGIVKRRGRGTPTVVVSSLIGGFVFGAAMVGMLAAMVRLRHLIFKVMTANVDGIAATLARMHMQGAAADVKRYFAEGLQYWPWVLLGYFNIGIMIVSLIGWWALSRLLERMRGIPDVHKLDPPPGDDVDALIGPVPVRLDKVRFRYPRAGQDALREVSLDVRAGEHLAIIGANGSGKTTLMLILAGRAPTSGTVDRPGTVGLGKLGGTAVVLQHPESQVLGTRVADDVVWGLPLGTTADVGRLLSEVGLEALAERDTGSLSGGELQRLALAAALAREPAMLIADEVTTMVDQQGRDALLAVLSGLTQRHRTALVHITHYDNEADSADRTLSLSDSPDNTDMVHTAAMPAPVIGVDQPQHAPALELVGVGHEYASGTPWAKTALRDINFVVEQGDGVLIHGGNGSGKSTLAWIMAGLTIPTTGACLLDGRPTHEQVGAVALSFQAARLQLMRSRVDLEVASAAGFSASEQDRVAAALTVVGLDPALGARRIDQLSGGQMRRVVLAGLLARAPRALILDEPLAGLDAASQRGLLRLLEDLRRARGLTVVVVSHDFAGMEELCPRTLHLRDGVLESAAASEAGGMS

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_6(4ZIR)
ECFA2_THEMA
[Raw transfer]



ADP_B_9(4HLU)
ECFA2_THEMA
[Raw transfer]



ADP_A_5(4HLU)
ECFA2_THEMA
[Raw transfer]



ATP_D_15(2IXF)

[Raw transfer]



ATP_A_3(2IXE)
TAP1_RAT
[Raw transfer]



ATP_C_12(2IXF)
TAP1_RAT
[Raw transfer]



ATP_B_8(2IXF)
TAP1_RAT
[Raw transfer]



ATP_D_6(2IXE)

[Raw transfer]



ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]



ATP_A_5(2IXF)
TAP1_RAT
[Raw transfer]



ADP_A_3(1F3O)
Y796_METJA
[Raw transfer]



LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]



LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]
58 HHSearch 84.9022% -87 - C1 -4F4C - PGP1_CAEEL -
51 Fugue 72.5019% -76 - C1 -3J16 - RLI1_YEAST -
59 HHSearch 68.6025% -86 - C1 -4FIN - ETTA_ECOLI -
3 PsiBlast_PDB 68.1138%-113 - C1 -2YZ2 - ECFA2_THEMA -
60 HHSearch 67.3124%-105 - C- -2IW3 - EF3A_YEAST -
63 HHSearch 64.3424% -75 - C1 -1YQT - ? -
21 PsiBlast_CBE 64.1138% -99 - C1 -4HLU 6.2 ECFA2_THEMA
5 PsiBlast_PDB 64.0038% -99 - C1 -4HLU 5.7 ECFA2_THEMA
6 PsiBlast_PDB 62.8433%-100 - C1 -4MKI 2.1 ECFA2_CALS4
64 HHSearch 62.3120% -81 - C1 -3OZX - ? -
17 PsiBlast_PDB 62.0825% -77 - C1 -1YQT - ? -
22 PsiBlast_CBE 62.0033%-102 - C1 -4MKI 3.9 ECFA2_CALS4
62 HHSearch 61.2325% -78 - C1 -3BK7 - ? -
67 HHSearch 59.5727% -66 - C1 -2VF7 - ? -
61 HHSearch 59.5021% -66 - C1 -3J16 - RLI1_YEAST -
4 PsiBlast_PDB 59.1038% -96 - C1 -4ZIR 6.0 ECFA2_THEMA
9 PsiBlast_PDB 57.6431%-108 - C1 -3GFO - ECFA3_CLOP1 -
10 PsiBlast_PDB 57.0930%-105 - C1 -1L2T - Y796_METJA -
12 PsiBlast_PDB 57.0030%-100 - C1 -3TIF 6.0 Y796_METJA
56 Fugue 56.2919% -80 - C1 -3B60 - MSBA_SALTY -
11 PsiBlast_PDB 54.9330%-103 - C1 -1F3O 5.9 Y796_METJA
28 PsiBlast_CBE 45.7032% -77 - C1 -2IXF 5.7 TAP1_RAT
32 PsiBlast_CBE 44.6731% -74 - C1 -2IXE 5.8 TAP1_RAT
27 PsiBlast_CBE 44.5432% -77 - C1 -2IXF 6.0
29 PsiBlast_CBE 44.4532% -79 - C1 -2IXF 5.6 TAP1_RAT
31 PsiBlast_CBE 43.6631% -80 - C1 -2IXE 5.7
30 PsiBlast_CBE 43.5832% -77 - C1 -2IXF 5.7 TAP1_RAT