Atome 2 Filter

@TOME V2.3
(Nov 2016)

Ref. - - Doc.

Global output mode :

Sort entries by :

Sequence Color type :

Show alignment :

Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling

Templates Information:

Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]

Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv2589: (2016-05-12 )
MASLQQSRRLVTEIPGPASQALTHRRAAAVSSGVGVTLPVFVARAGGGIVEDVDGNRLIDLGSGIAVTTIGNSSPRVVDAVRTQVAEFTHTCFMVTPYEGYVAVAEQLNRITPGSGPKRSVLFNSGAEAVENAVKIARSYTGKPAVVAFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEIYRAPLSYPYRDGLLDKQLATNGELAAARAIGVIDKQVGANNLAALVIEPIQGEGGFIVPAEGFLPALLDWCRKNHVVFIADEVQTGFARTGAMFACEHEGPDGLEPDLICTAKGIADGLPLSAVTGRAEIMNAPHVGGLGGTFGGNPVACAAALATIATIESDGLIERARQIERLVTDRLTTLQAVDDRIGDVRGRGAMIAVELVKSGTTEPDAGLTERLATAAHAAGVIILTCGMFGNIIRLLPPLTIGDELLSEGLDIVCAILADL

Atome Classification :

(41 SA)

Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)

(Atome)

(Ident)

(Tito)

(Num)

(pKd)

(Uniprot)

P00_A_11(4JEX)
ARGD_SALTY
[Raw transfer]

P00_B_26(4JEX)
ARGD_SALTY
[Raw transfer]

PLP_A_3(2PB2)
ARGD_SALTY
[Raw transfer]

P00_B_19(4JEW)
ARGD_SALTY
[Raw transfer]

P00_B_18(4JEZ)
ARGD_SALTY
[Raw transfer]

PLP_A_3(4NOG)
?
[Raw transfer]

PLP_B_5(4NOG)
?
[Raw transfer]

PLP_A_3(4JF1)
ARGD_SALTY
[Raw transfer]

PLP_A_3(4NOG)
?
[Raw transfer]

PLP_B_10(4ZWM)
?
[Raw transfer]

PLP_A_3(4JF1)
ARGD_SALTY
[Raw transfer]

PLP_B_9(4JF1)
ARGD_SALTY
[Raw transfer]

PLP_B_13(4JEY)
ARGD_SALTY
[Raw transfer]

PLP_A_3(4JEY)
ARGD_SALTY
[Raw transfer]

PLP_A_3(4ZWM)
?
[Raw transfer]

PFM_A_5(2OAT)
OAT_HUMAN
[Raw transfer]

PLP_A_3(4ZLV)
?
[Raw transfer]

PLP_B_4(2PB0)
ARGD_SALTY
[Raw transfer]

PLP_A_3(2PB0)
ARGD_SALTY
[Raw transfer]

PLP_B_7(4ZLV)
?
[Raw transfer]

PLP_A_3(3DOD)
BIOK_BACSU
[Raw transfer]

PEG_A_6(5EQC)
?
[Raw transfer]

EDO_A_7(4JEY)
ARGD_SALTY
[Raw transfer]

EDO_B_7(2PB0)
ARGD_SALTY
[Raw transfer]

1

PsiBlast_PDB

98.19

83%

- C2 -

-

?

-

114

HHSearch

96.41

78%

- C2 -

-

?

-

2

PsiBlast_PDB

95.59

77%

- C2 -

-

?

-

21

PsiBlast_CBE

92.71

68%

- C2 -

-

?

-

113

HHSearch

92.40

64%

- C2 -

-

?

-

32

PsiBlast_CBE

92.34

62%

- C2 -

-

?

-

36

PsiBlast_CBE

92.27

62%

- C2 -

-

?

-

31

PsiBlast_CBE

91.99

62%

- C2 -

-

?

-

29

PsiBlast_CBE

91.98

62%

- C2 -

-

?

-

3

PsiBlast_PDB

91.97

68%

- C2 -

-

?

-

22

PsiBlast_CBE

91.95

68%

- C2 -

-

?

-

23

PsiBlast_CBE

91.69

68%

- C2 -

-

?

-

25

PsiBlast_CBE

91.62

62%

- C2 -

-

?

-

34

PsiBlast_CBE

91.54

62%

- C2 -

-

?

-

5

PsiBlast_PDB

91.51

62%

- C2 -

-

?

-

27

PsiBlast_CBE

91.50

62%

- C2 -

-

?

-

35

PsiBlast_CBE

91.38

62%

- C2 -

-

?

-

33

PsiBlast_CBE

91.17

62%

- C2 -

-

?

-

6

PsiBlast_PDB

91.11

62%

- C2 -

-

?

-

30

PsiBlast_CBE

91.10

62%

- C2 -

-

?

-

122

HHSearch

72.57

33%

* C2 *

131

HHSearch

69.69

30%

- C2 -

?

132

HHSearch

69.57

31%

- C2 -

68

PsiBlast_CBE

67.81

32%

- C2 -

70

PsiBlast_CBE

67.73

31%

- C2 -

73

PsiBlast_CBE

67.70

31%

- C2 -

67

PsiBlast_CBE

67.28

32%

- C2 -

52

PsiBlast_CBE

67.25

31%

- C2 -

87

PsiBlast_CBE

67.11

31%

- C2 -

?

65

PsiBlast_CBE

67.03

31%

- C2 -

71

PsiBlast_CBE

66.88

31%

- C2 -

72

PsiBlast_CBE

66.75

31%

- C2 -

94

PsiBlast_CBE

66.65

31%

- C2 -

?

74

PsiBlast_CBE

66.62

31%

- C2 -

66

PsiBlast_CBE

66.53

31%

- C2 -

90

PsiBlast_CBE

66.41

31%

- C2 -

?

91

PsiBlast_CBE

66.29

31%

- C2 -

?

53

PsiBlast_CBE

66.18

31%

- C2 -

95

PsiBlast_CBE

66.11

31%

- C2 -

?

93

PsiBlast_CBE

65.63

31%

- C2 -

?

92

PsiBlast_CBE

65.33

31%

- C2 -

?