@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv3001c: (2016-05-16 )
MFYDDDADLSIIQGRKVGVIGYGSQGHAHSLSLRDSGVQVRVGLKQGSRSRPKVEEQGLDVDTPAEVAKWADVVMVLAPDTAQAEIFAGDIEPNLKPGDALFFGHGLNVHFGLIKPPADVAVAMVAPKGPGHLVRRQFVDGKGVPCLVAVEQDPRGDGLALALSYAKAIGGTRAGVIKTTFKDETETDLFGEQTVLCGGTEELVKAGFEVMVEAGYPAELAYFEVLHELKLIVDLMYEGGLARMYYSVSDTAEFGGYLSGPRVIDAGTKERMRDILREIQDGSFVHKLVADVEGGNKQLEELRRQNAEHPIEVVGKKLRDLMSWVDRPITETA

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_A_3(4XDZ)
?
[Raw transfer]



NDP_A_3(4XDZ)
?
[Raw transfer]



NDP_A_6(4TSK)
?
[Raw transfer]



NDP_B_11(4XDZ)
?
[Raw transfer]



NAP_A_3(4KQW)
?
[Raw transfer]



NDP_A_6(4TSK)
?
[Raw transfer]



NAP_A_3(4KQW)
?
[Raw transfer]



NAD_A_3(4KQX)
?
[Raw transfer]



NAP_A_2(5E4R)
?
[Raw transfer]



NDP_A_5(3FR8)
ILV5_ORYSJ
[Raw transfer]



NAI_B_12(4XDY)
?
[Raw transfer]



NAD_B_10(4KQX)
?
[Raw transfer]



NAI_A_5(4XDY)
?
[Raw transfer]



40E_A_5(5E4R)
?
[Raw transfer]



HIO_B_9(4KQX)
?
[Raw transfer]



HIO_A_4(4KQX)
?
[Raw transfer]



40E_A_5(5E4R)
?
[Raw transfer]



40E_A_6(4XDZ)
?
[Raw transfer]
21 PsiBlast_CBE 96.12100%-106 - C2 -4YPO - ? -
34 HHSearch 95.34100%-106 - C2 -4YPO - ? -
1 PsiBlast_PDB 95.21100%-106 - C2 -4YPO - ? -
22 PsiBlast_CBE 84.2255% -97 - C2 -4XIY - ILVC_AZOVD -
23 PsiBlast_CBE 83.0855% -99 - C2 -4XIY - ILVC_AZOVD -
52 Fugue 82.5955% -99 - C2 -1NP3 - ILVC_PSEAE -
37 HHSearch 82.5652% -95 - C2 -4TSK 7.1 ?
35 HHSearch 82.3755% -99 - C2 -1NP3 - ILVC_PSEAE -
2 PsiBlast_PDB 82.2455% -99 - C2 -1NP3 - ILVC_PSEAE -
39 HHSearch 82.1855% -98 - C2 -4KQW 9.0 ?
6 PsiBlast_PDB 82.1452% -97 - C2 -4TSK 8.9 ?
4 PsiBlast_PDB 82.0555% -98 - C2 -4KQW 9.0 ?
26 PsiBlast_CBE 81.3254% -97 - C2 -4KQX 7.4 ?
24 PsiBlast_CBE 80.9455% -98 - C2 -4XIY - ILVC_AZOVD -
5 PsiBlast_PDB 80.1054% -97 - C2 -4KQX 7.3 ?
8 PsiBlast_PDB 78.5245% -99 - C2 -5E4R 9.2 ?
9 PsiBlast_PDB 77.5645% -95 - C2 -4XDZ 9.9 ?
36 HHSearch 77.3343% -95 - C2 -4XDZ 9.9 ?
27 PsiBlast_CBE 77.1144% -91 - C2 -4XDY 6.3 ?
28 PsiBlast_CBE 76.9345% -95 - C2 -4XDZ 9.6 ?
32 HHSearch 74.7944% -88 - C2 -4XDY 7.8 ?
31 HHSearch 71.9442%-100 - C2 -5E4R 4.3 ?
14 PsiBlast_PDB 57.5230% -90 - C2 -3FR8 6.4 ILV5_ORYSJ