@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv3329: (2016-05-18 )
MHFARHGAGIQHPVIVRGDGVTIFDDRGKSYLDALSGLFVVQVGYGRAELAEAAARQAGTLGYFPLWGYATPPAIELAERLARYAPGDLNRVFFTSGGTEAVETAWKVAKQYFKLTGKPGKQKVISRSIAYHGTTQGALAITGLPLFKAPFEPLTPGGFRVPNTNFYRAPLHTDLKEFGRWAADRIAEAIEFEGPDTVAAVFLEPVQNAGGCIPAPPGYFERVREICDRYDVLLVSDEVICAFGRIGSMFACEDLGYVPDMITCAKGLTSGYSPLGAMIASDRLFEPFNDGETMFAHGYTFGGHPVSAAVGLANLDIFEREGLSDHVKRNSPALRATLEKLYDLPIVGDIRGEGYFFGIELVKDQATKQTFTDDERARLLGQVSAALFEAGLYCRTDDRGDPVVQVAPPLISGQPEFDTIETILRSVLTDTGRKYLHL

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

P00_A_11(4JEX)
ARGD_SALTY
[Raw transfer]



P00_B_26(4JEX)
ARGD_SALTY
[Raw transfer]



PXG_B_4(4BA5)
?
[Raw transfer]



P00_A_3(4JEW)
ARGD_SALTY
[Raw transfer]



P00_B_18(4JEZ)
ARGD_SALTY
[Raw transfer]



P00_B_19(4JEW)
ARGD_SALTY
[Raw transfer]



PXG_A_3(4BA5)
?
[Raw transfer]



PLP_A_4(2E54)
ARGD_THEMA
[Raw transfer]



P00_A_13(4JEZ)
ARGD_SALTY
[Raw transfer]



PLP_B_13(4JEY)
ARGD_SALTY
[Raw transfer]



PLP_A_3(4JEY)
ARGD_SALTY
[Raw transfer]



PLP_A_3(4JF1)
ARGD_SALTY
[Raw transfer]



PLP_A_3(3I5T)
?
[Raw transfer]



PLP_B_9(4JF1)
ARGD_SALTY
[Raw transfer]



PLP_A_3(2EO5)
?
[Raw transfer]



PLP_A_3(4JF1)
ARGD_SALTY
[Raw transfer]



PLP_B_4(2PB0)
ARGD_SALTY
[Raw transfer]



PLP_A_3(1VEF)
ARGD_THET8
[Raw transfer]



PLP_A_3(2PB0)
ARGD_SALTY
[Raw transfer]



PLP_A_4(4PPM)
?
[Raw transfer]



PLP_B_4(1VEF)
ARGD_THET8
[Raw transfer]



TA8_A_3(4A6R)
?
[Raw transfer]



TA8_B_4(4A6R)
?
[Raw transfer]



EDO_A_7(4JEY)
ARGD_SALTY
[Raw transfer]



EDO_B_7(2PB0)
ARGD_SALTY
[Raw transfer]
108 HHSearch 91.6239% -95 - C1 -3HMU - ? -
21 PsiBlast_CBE 91.2740% -94 - C1 -3HMU - ? -
1 PsiBlast_PDB 91.1940% -93 - C1 -3HMU - ? -
24 PsiBlast_CBE 89.3136% -99 - C1 -4BA4 - ? -
25 PsiBlast_CBE 89.0436% -99 - C1 -4AH3 - ? -
110 HHSearch 88.5535%-100 - C1 -4A6R 4.0 ?
27 PsiBlast_CBE 87.9536% -99 - C1 -4AH3 - ? -
33 PsiBlast_CBE 87.9036% -99 - C1 -4A6R 4.0 ?
26 PsiBlast_CBE 87.7636% -97 - C1 -4AH3 - ? -
23 PsiBlast_CBE 87.7636% -96 - C1 -4BA5 5.6 ?
11 PsiBlast_PDB 87.5736%-100 - C1 -4BA4 - ? -
7 PsiBlast_PDB 87.5536% -99 - C1 -4A6R - ? -
32 PsiBlast_CBE 86.8836% -98 - C1 -4A6T - ? -
31 PsiBlast_CBE 86.6336% -98 - C1 -4A6T - ? -
19 PsiBlast_PDB 86.6034% -96 - C1 -4E3Q - ? -
18 PsiBlast_PDB 86.5434% -95 - C1 -4E3R - ? -
29 PsiBlast_CBE 86.5336% -97 - C1 -4A72 - ? -
12 PsiBlast_PDB 86.3236% -97 - C1 -4BA5 5.5 ?
10 PsiBlast_PDB 86.2336% -97 - C1 -4AH3 - ? -
28 PsiBlast_CBE 85.6136% -96 - C1 -4A72 - ? -
103 HHSearch 84.3135% -99 - C1 -3I5T 3.6 ?
114 HHSearch 72.8630% -98 - C1 -4JF1 3.3 ARGD_SALTY
60 PsiBlast_CBE 69.9131% -92 - C1 -2EO5 2.6 ?
51 PsiBlast_CBE 68.0333% -90 - C1 -2E54 3.0 ARGD_THEMA
68 PsiBlast_CBE 66.7331% -91 * C1 *1VEF 3.2 ARGD_THET8
67 PsiBlast_CBE 64.8931% -90 - C1 -1VEF 3.2 ARGD_THET8
70 PsiBlast_CBE 54.6932% -91 - C1 -4JEY 3.7 ARGD_SALTY
79 PsiBlast_CBE 54.4532% -95 - C1 -4JEW 3.4 ARGD_SALTY
75 PsiBlast_CBE 54.0231% -94 - C1 -4JEZ 3.5 ARGD_SALTY
87 PsiBlast_CBE 53.9631% -93 - C1 -2PB0 3.6 ARGD_SALTY
74 PsiBlast_CBE 53.6231% -93 - C1 -4JEZ 3.5 ARGD_SALTY
86 PsiBlast_CBE 52.9931% -89 - C1 -2PB0 3.6 ARGD_SALTY
77 PsiBlast_CBE 52.9232% -95 - C1 -4JEX 3.4 ARGD_SALTY
73 PsiBlast_CBE 52.7632% -93 - C1 -4JF1 3.3 ARGD_SALTY
76 PsiBlast_CBE 52.7132% -94 - C1 -4JEX 3.9 ARGD_SALTY
71 PsiBlast_CBE 52.6732% -92 - C1 -4JEY 3.3 ARGD_SALTY
72 PsiBlast_CBE 52.5432% -89 - C1 -4JF1 3.5 ARGD_SALTY
69 PsiBlast_CBE 52.2533% -89 - C1 -4PPM 2.8 ?
78 PsiBlast_CBE 51.6632% -89 - C1 -4JEW 3.7 ARGD_SALTY