@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0373: (2016-01-02 )
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPPAPVAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASIGEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVDVAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAVQAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKLDGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Atome Classification :

(47 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_A_6(2J7P)
FTSY_THEAQ
[Raw transfer]




GCP_A_3(1OKK)
SRP54_THEAQ
[Raw transfer]




GDP_B_11(4C7O)
FTSY_ECOLI
[Raw transfer]




GCP_D_17(1OKK)
FTSY_THEAQ
[Raw transfer]




GCP_B_6(1RJ9)
SRP54_THEAQ
[Raw transfer]




GNP_B_20(2J7P)
SRP54_THEAQ
[Raw transfer]




GNP_A_12(2J7P)
SRP54_THEAQ
[Raw transfer]




GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]




GDP_A_8(4C7O)
FTSY_ECOLI
[Raw transfer]




GDP_A_8(4C7O)
SRP54_ECOLI
[Raw transfer]




GDP_C_14(4C7O)
SRP54_ECOLI
[Raw transfer]




GDP_A_6(1O87)
SRP54_THEAQ
[Raw transfer]




GDP_A_16(3DM5)
SRP54_PYRFU
[Raw transfer]




GDP_A_16(3DM5)
SRP54_PYRFU
[Raw transfer]




GCP_A_3(1OKK)
FTSY_THEAQ
[Raw transfer]




GNP_B_20(2J7P)
FTSY_THEAQ
[Raw transfer]




GNP_K_11(2Q9C)
FTSY_THEAQ
[Raw transfer]




GNP_B_2(1JPJ)
SRP54_THEAQ
[Raw transfer]




GNP_B_5(1JPN)
SRP54_THEAQ
[Raw transfer]




GCP_B_6(1RJ9)
FTSY_THEAQ
[Raw transfer]




GNP_A_6(1JPN)
SRP54_THEAQ
[Raw transfer]




GCP_B_6(1RJ9)
FTSY_THEAQ
[Raw transfer]




GOL_B_14(3DMD)
?
[Raw transfer]




GOL_C_16(3DMD)
?
[Raw transfer]




GDP_C_14(4C7O)
FTSY_ECOLI
[Raw transfer]




GNP_A_12(2J7P)
FTSY_THEAQ
[Raw transfer]




GOL_A_15(3DMD)
?
[Raw transfer]




GNP_T_20(2Q9B)
FTSY_THEAQ
[Raw transfer]




GDP_B_12(1O87)
SRP54_THEAQ
[Raw transfer]




GDP_B_2(2NG1)
SRP54_THEAQ
[Raw transfer]




GDP_D_2(2IYL)
FTSY_THEAQ
[Raw transfer]




CIT_B_4(1VMA)
?
[Raw transfer]




GDP_A_7(1NG1)
SRP54_THEAQ
[Raw transfer]




GDP_C_2(3E70)
?
[Raw transfer]




GDP_C_2(3E70)
?
[Raw transfer]




EDO_A_2(2YHS)
FTSY_ECOLI
[Raw transfer]




GDP_D_18(4C7O)
FTSY_ECOLI
[Raw transfer]




EDO_Q_17(2Q9B)
FTSY_THEAQ
[Raw transfer]




84 HHSearch 97.1167%-118 - C6 -2YHS 2.5 FTSY_ECOLI
1 PsiBlast_PDB 96.7665%-119 - C6 -2YHS - FTSY_ECOLI -
3 PsiBlast_PDB 94.7566%-121 - C6 -2QY9 - FTSY_ECOLI -
4 PsiBlast_PDB 93.4567%-120 - C6 -1FTS - FTSY_ECOLI -
22 PsiBlast_CBE 91.8568%-114 - C6 -4C7O 3.2 FTSY_ECOLI
5 PsiBlast_PDB 91.8467%-118 - C6 -3ZN8 - FTSY_ECOLI -
2 PsiBlast_PDB 89.6767%-112 - C6 -2XXA - FTSY_ECOLI -
6 PsiBlast_PDB 89.4268%-114 - C6 -4C7O 7.1 FTSY_ECOLI
21 PsiBlast_CBE 89.3167%-112 - C6 -2XXA - FTSY_ECOLI -
23 PsiBlast_CBE 86.8551%-110 - C6 -1VMA 3.8 ?
95 HHSearch 86.7852%-106 - C6 -1VMA - ? -
7 PsiBlast_PDB 86.6251%-110 - C6 -1VMA - ? -
86 HHSearch 84.2243%-116 - C6 -3B9Q - CFTSY_ARATH -
85 HHSearch 83.9742%-116 - C6 -2OG2 - CFTSY_ARATH -
24 PsiBlast_CBE 83.8448% -99 - C6 -2Q9C - FTSY_THEAQ -
26 PsiBlast_CBE 83.3848% -98 - C6 -2Q9A - FTSY_THEAQ -
98 HHSearch 82.6650%-116 * C6 *1RJ9 2.5 FTSY_THEAQ
16 PsiBlast_PDB 82.1348% -95 - C6 -2Q9C 6.4 FTSY_THEAQ
8 PsiBlast_PDB 82.0441%-118 - C6 -2OG2 - CFTSY_ARATH -
18 PsiBlast_PDB 81.9652%-118 - C6 -2IYL 7.2 FTSY_THEAQ
15 PsiBlast_PDB 81.9048% -98 - C6 -2Q9B 5.9 FTSY_THEAQ
25 PsiBlast_CBE 81.8948%-102 - C6 -2Q9B 2.8 FTSY_THEAQ
19 PsiBlast_PDB 81.1052%-109 - C6 -2J7P 2.6 FTSY_THEAQ
29 PsiBlast_CBE 80.0552%-108 - C6 -2J7P 2.7 FTSY_THEAQ
11 PsiBlast_PDB 79.5848% -98 - C6 -1RJ9 2.5 FTSY_THEAQ
12 PsiBlast_PDB 79.4548%-102 - C6 -1OKK 9.1 FTSY_THEAQ
94 HHSearch 74.8236%-102 - C6 -3DM5 7.5 SRP54_PYRFU
35 PsiBlast_CBE 74.5636%-106 - C6 -3DM5 7.6 SRP54_PYRFU
34 PsiBlast_CBE 74.5036%-107 - C6 -3DM5 7.0 SRP54_PYRFU
52 PsiBlast_CBE 74.3835% -94 - C6 -2J7P 9.4 SRP54_THEAQ
90 HHSearch 74.2143%-110 - C6 -3E70 7.1 ?
30 PsiBlast_CBE 73.9343%-104 - C6 -3E70 7.1 ?
32 PsiBlast_CBE 73.9243%-104 - C6 -3DMD 3.1 ?
57 PsiBlast_CBE 73.9135% -92 - C6 -1NG1 7.4 SRP54_THEAQ
51 PsiBlast_CBE 73.8735% -96 - C6 -2J7P 9.4 SRP54_THEAQ
64 PsiBlast_CBE 73.5735% -94 - C6 -1O87 7.1 SRP54_THEAQ
60 PsiBlast_CBE 73.3535% -92 - C6 -1JPJ 7.6 SRP54_THEAQ
56 PsiBlast_CBE 73.3035% -93 - C6 -1OKK 9.5 SRP54_THEAQ
37 PsiBlast_CBE 73.2933%-101 - C6 -4C7O 7.4 SRP54_ECOLI
20 PsiBlast_PDB 73.1043%-102 - C6 -3DMD 3.4 ?
59 PsiBlast_CBE 72.9035% -94 - C6 -1JPN 7.4 SRP54_THEAQ
65 PsiBlast_CBE 72.6835% -95 - C6 -1O87 7.1 SRP54_THEAQ
31 PsiBlast_CBE 72.4043%-106 - C6 -3DMD 2.2 ?
58 PsiBlast_CBE 71.9235% -94 - C6 -1JPN 6.5 SRP54_THEAQ
38 PsiBlast_CBE 71.8633% -99 - C6 -4C7O 7.5 SRP54_ECOLI
46 PsiBlast_CBE 71.5335% -92 - C6 -2NG1 6.3 SRP54_THEAQ
47 PsiBlast_CBE 70.8935% -98 - C6 -1RJ9 9.5 SRP54_THEAQ