@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0447: (2016-01-05 )
MATKASFNWEDPLLLDQQLTEEERMVRDSAQQFAQDKLAPRVLEAFRHEQTDPKIFREMGETGLLGATIPEAYGGSGLNYVCYGLIAREVERVDSGYRSMMSVQSSLVMVPIHEFGNEATRQKYLPKLASGEYIGCFGLTEPNHGSDPGSMVTRAKKVDGGYRLSGSKMWITNSPIADVFVVWAKDDEGQIRGFVLEKGWEGLSAPAIHGKVGLRASITGEIVMDNVFVPEENAFPEVRGLRGPFTCLNSARYGISWGALGAAEFCWHTARQYVLDRQQFGRPLAANQLIQKKLADMQTEITLALQGCLRLGRMKDEGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGIARHLVNLEVVNTYEGTHDVHALILGRAQTGIQAFF

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_E_5(1SIR)
GCDH_HUMAN
[Raw transfer]



FAD_A_2(2R0N)
GCDH_HUMAN
[Raw transfer]



FDA_A_2(3SF6)
?
[Raw transfer]



FDA_A_2(3SF6)
?
[Raw transfer]



FAD_A_2(2R0M)
GCDH_HUMAN
[Raw transfer]



FAD_E_5(1SIQ)
GCDH_HUMAN
[Raw transfer]



FAD_E_5(1SIQ)
GCDH_HUMAN
[Raw transfer]



FAD_B_8(4L1F)
?
[Raw transfer]



FAD_C_3(2DVL)
?
[Raw transfer]



FAD_A_9(1BUC)
ACDS_MEGEL
[Raw transfer]



FAD_A_3(4L1F)
?
[Raw transfer]



FAD_D_4(2DVL)
?
[Raw transfer]



NBC_I_9(1SIR)
GCDH_HUMAN
[Raw transfer]



FAD_K_11(1JQI)
ACADS_RAT
[Raw transfer]



TGC_A_3(2R0N)
GCDH_HUMAN
[Raw transfer]



4NI_A_3(2R0M)
GCDH_HUMAN
[Raw transfer]
31 PsiBlast_CBE 98.2685% -93 - C1 -3GNC - ? -
3 PsiBlast_PDB 98.1185% -92 - C1 -3II9 - ? -
99 HHSearch 98.1086% -92 - C1 -3II9 - ? -
5 PsiBlast_PDB 98.0785% -91 - C1 -3GNC - ? -
4 PsiBlast_PDB 97.9985% -91 - C1 -3GQT - ? -
23 PsiBlast_CBE 97.8085% -88 - C1 -3II9 - ? -
1 PsiBlast_PDB 97.5485% -92 - C1 -3D6B - ? -
28 PsiBlast_CBE 97.3885% -92 - C1 -3GQT - ? -
30 PsiBlast_CBE 97.3085% -89 - C1 -3GNC - ? -
22 PsiBlast_CBE 97.3085% -91 - C1 -3II9 - ? -
24 PsiBlast_CBE 97.0485% -92 - C1 -3II9 - ? -
29 PsiBlast_CBE 96.8785% -88 - C1 -3GNC - ? -
27 PsiBlast_CBE 96.8785% -90 - C1 -3GQT - ? -
2 PsiBlast_PDB 96.6585% -88 - C1 -3EOM - ? -
21 PsiBlast_CBE 96.5285% -91 - C1 -3D6B - ? -
25 PsiBlast_CBE 96.0185% -91 - C1 -3EON - ? -
26 PsiBlast_CBE 95.9585% -92 - C1 -3GQT - ? -
32 PsiBlast_CBE 91.2469% -90 - C1 -4W9U - ? -
34 PsiBlast_CBE 90.8669% -89 - C1 -4W9U - ? -
8 PsiBlast_PDB 90.6865% -87 - C1 -1SIR 8.7 GCDH_HUMAN
7 PsiBlast_PDB 89.9865% -85 - C1 -1SIQ 8.2 GCDH_HUMAN
100 HHSearch 89.8766% -84 - C1 -1SIQ 8.2 GCDH_HUMAN
9 PsiBlast_PDB 89.7065% -87 - C1 -2R0N 8.7 GCDH_HUMAN
10 PsiBlast_PDB 88.4265% -84 - C1 -2R0M 8.6 GCDH_HUMAN
103 HHSearch 83.0445% -81 - C1 -3SF6 9.5 ?
12 PsiBlast_PDB 82.9746% -80 - C1 -3SF6 9.5 ?
17 PsiBlast_PDB 77.9237% -76 - C1 -2DVL 9.0 ?
54 PsiBlast_CBE 77.1237% -75 - C1 -2DVL 9.4 ?
89 Fugue 75.9036% -74 - C1 -1BUC 9.8 ACDS_MEGEL
16 PsiBlast_PDB 75.8536% -75 - C1 -4L1F 9.7 ?
53 PsiBlast_CBE 75.5136% -74 - C1 -4L1F 9.1 ?
67 PsiBlast_CBE 74.2431% -74 - C1 -1JQI 9.6 ACADS_RAT