@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1487: (2016-01-29 )
MRIAALDQGTTSTRVLVASQDGSADIQLALRHQQHHPQSGWVEHDPLELLANLQRCLEASGRVDAIGLANQGESCMAWDARSGEPLSPLIVWQDNRTTPHIERLRASGAEALVLERSGLPLDAYFSASKLGWIVEHLPAARRALKAGRLRLGTSDAWFLDRLCGTFATDVTTASRTALMNLAEGRWDPDLCALFGVPIECLPEIRDTVGHFGVIGNTPLTASVVDQQASLYGHGCRQPGDAKITFGTGAFALTLSGERIIRSPETGLLATIAWQIDGKPVYAMDGGVYDASAAVEWAGRLGLFSDFSELAGFDRPPAIERGLAFVPALSGLACPHWDRSAGAMWLGMDAGTRREDLCQALLEGVVLRSAEVIQAMDGYLKVTDRLSIDGGLARSPYFAQFLADSLQRRIVTQRFDELTAFGCAALAARGLGHELAEPRNTRTEFQPRVDAGTARRWQVRFSEAVARTRGWR

Atome Classification :

(37 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATS_Y_4(1GLJ)
GLPK_ECOLI
[Raw transfer]




ADP_G_6(1GLC)
GLPK_ECOLI
[Raw transfer]




ATF_Y_5(1BWF)
GLPK_ECOLI
[Raw transfer]




ATS_O_5(1GLJ)
GLPK_ECOLI
[Raw transfer]




ACP_Y_5(1GLL)
GLPK_ECOLI
[Raw transfer]




GOL_O_4(1BO5)
GLPK_ECOLI
[Raw transfer]




GOL_O_7(3H46)
GLPK_ENTCA
[Raw transfer]




GOL_Z_5(1BO5)
GLPK_ECOLI
[Raw transfer]




GOL_O_3(3FLC)
GLPK_ENTCA
[Raw transfer]




GOL_G_7(1BOT)
GLPK_ECOLI
[Raw transfer]




ATF_O_6(1BWF)
GLPK_ECOLI
[Raw transfer]




GOL_O_8(3H3N)
GLPK_ENTCA
[Raw transfer]




GOL_I_9(1BOT)
GLPK_ECOLI
[Raw transfer]




GOL_O_3(3D7E)
GLPK_ENTCA
[Raw transfer]




GOL_G_9(1GLA)
GLPK_ECOLI
[Raw transfer]




GOL_O_8(1GLL)
GLPK_ECOLI
[Raw transfer]




GOL_C_3(1XUP)
GLPK_ENTCA
[Raw transfer]




G3H_G_4(1GLD)
GLPK_ECOLI
[Raw transfer]




G3H_G_5(1GLE)
GLPK_ECOLI
[Raw transfer]




MPD_C_3(2D4W)
?
[Raw transfer]




MPD_C_3(2D4W)
?
[Raw transfer]




MPD_D_4(2D4W)
?
[Raw transfer]




17 PsiBlast_PDB 92.2035% -92 - C1 -4E1J - GLPK_RHIME -
87 HHSearch 91.4037% -88 - C1 -3WXL - ? -
2 PsiBlast_PDB 91.1633% -88 - C1 -2ZF5 - GLPK_THEKO -
81 HHSearch 91.0039% -82 * C1 *2DPN - ? -
83 HHSearch 90.7333% -88 - C1 -3G25 - GLPK_STAAC -
1 PsiBlast_PDB 90.1438% -81 - C1 -2DPN - ? -
77 HHSearch 89.6235% -83 - C1 -2ZF5 - GLPK_THEKO -
72 PsiBlast_CBE 89.0932% -84 - C1 -3FLC 3.4 GLPK_ENTCA
86 HHSearch 89.0035% -84 - C1 -2D4W 3.1 ?
18 PsiBlast_PDB 88.5632% -86 - C1 -3G25 - GLPK_STAAC -
79 HHSearch 88.4834% -86 - C1 -3EZW - GLPK_ECOLI -
60 PsiBlast_CBE 88.1832% -84 - C1 -3H46 2.7 GLPK_ENTCA
84 HHSearch 87.9430% -81 - C1 -2W40 - ? -
70 PsiBlast_CBE 87.8932% -84 - C1 -3H3N 2.7 GLPK_ENTCA
58 PsiBlast_CBE 87.8332% -83 - C1 -3D7E 2.6 GLPK_ENTCA
32 PsiBlast_CBE 87.5533% -90 - C1 -3EZW - GLPK_ECOLI -
33 PsiBlast_CBE 87.3233% -87 - C1 -3EZW - GLPK_ECOLI -
62 PsiBlast_CBE 87.3032% -84 - C1 -3H45 - GLPK_ENTCA -
4 PsiBlast_PDB 87.3033% -87 - C1 -3EZW - GLPK_ECOLI -
68 PsiBlast_CBE 87.0932% -84 - C1 -3H3O - GLPK_ENTCA -
39 PsiBlast_CBE 86.7933% -88 - C1 -1GLL 2.8 GLPK_ECOLI
41 PsiBlast_CBE 86.3633% -86 - C1 -1BWF 3.8 GLPK_ECOLI
6 PsiBlast_PDB 86.1033% -86 - C1 -1GLJ 3.6 GLPK_ECOLI
49 PsiBlast_CBE 86.0133% -86 - C1 -1BO5 4.6 GLPK_ECOLI
40 PsiBlast_CBE 85.9833% -87 - C1 -1GLJ 3.1 GLPK_ECOLI
15 PsiBlast_PDB 85.7833% -81 - C1 -1BOT 4.5 GLPK_ECOLI
13 PsiBlast_PDB 85.4933% -84 - C1 -1GLE 3.1 GLPK_ECOLI
16 PsiBlast_PDB 85.3133% -83 - C1 -1BO5 2.8 GLPK_ECOLI
56 PsiBlast_CBE 85.1032% -83 - C1 -2D4W 3.1 ?
7 PsiBlast_PDB 84.9033% -84 - C1 -1GLL 3.5 GLPK_ECOLI
11 PsiBlast_PDB 84.7033% -83 - C1 -1GLC 4.3 GLPK_ECOLI
5 PsiBlast_PDB 84.6333% -84 - C1 -1BWF 4.8 GLPK_ECOLI
12 PsiBlast_PDB 84.5033% -84 - C1 -1GLD 3.3 GLPK_ECOLI
9 PsiBlast_PDB 84.4933% -84 - C1 -1GLA 3.0 GLPK_ECOLI
48 PsiBlast_CBE 84.4733% -85 - C1 -1BOT 4.4 GLPK_ECOLI
55 PsiBlast_CBE 84.1932% -82 - C1 -2D4W 2.7 ?
74 PsiBlast_CBE 77.4833% -72 - C1 -1XUP 2.4 GLPK_ENTCA