@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA1779: (2016-02-01 )
MSTDSPLRTTASTCCYCGVGCGVLIEHDGERILGVQGDPRHPANFGRLCSKGASLHLTGDLQARALYPQLRLGKQLARARSDWESALEHAAGRFAETIREHGPDSVAFYISGQLLTEDYYAFNKLARALVGTNNIDSNSRLCMSSAVVGYKRSLGADAPPCSYEDLDCADCVLIAGSNMAFAHPVLFRRLEAAKAARPEMRIVVIDPRRTDTCELADLHLALLPGTDVALFHGILHILLWEDWIDRSFIAEHTEGFADLKELVRDYTPAAVADICGIDRADLQRCAEWIGRSPRFLSLWCMGLNQSSAGSAKNSALINLHLATGKIGRAGCGPFSLTGQPNAMGGRETGSLANLLPGHREAADPGHRAEVAHYWGVEQLPTSPGLSAIELFDAVHDGRIKALWIACTNPAQSLPDQRKIHEALARCPFVVVQEAFAGTETCQYADLLLPAASWGEKEGSVTNSERRISHVRRAVPPPGEARQDWNIVCDFARRLEGHLRPAKPGLFAFADSRSLFDEYKLLTAGRDLDLSGLSYALLDRLGPQQWPFPTGAEQGTARLYADGRFPTASGRAQLVAEPYRAAQEKRDARYPLTLNTGRLRDQWHGMSRTGTCARLFGHEEEALVHLHPEELRRRQLLDGQLVRLKSRRGALVLPVSADDSVRPGQAFLPMHWGDRFLKGLGCNVLTLPAFDPLSKQPELKHAGVQVESVELPWRLFALVETDIQARFEALRALCEVFDHASFSLAGRERPALLVSAAHHEAPGADLLERIDRQLELLDGPILAYDDPRRAIGKRVRLEDGRIVAVRLAGETLARDWLKELWLTGRADSELRRWLLAPLGAAPGRPSQGAGGKTLCSCQNVSQQTVLGGIARGLDLDGLKREFGCGTGCGSCVPEIKRLLAAPRPMAANA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

MGD_A_5(2JIQ)
NAPA_DESDA
[Raw transfer]



MGD_A_5(2JIO)
NAPA_DESDA
[Raw transfer]



MGD_A_5(2V3V)
NAPA_DESDA
[Raw transfer]



MGD_A_5(2JIR)
NAPA_DESDA
[Raw transfer]



MGD_A_5(2JIM)
NAPA_DESDA
[Raw transfer]



MGD_A_5(2JIP)
NAPA_DESDA
[Raw transfer]



MGD_A_5(2V45)
NAPA_DESDA
[Raw transfer]



MGD_A_5(2NAP)
NAPA_DESDA
[Raw transfer]



MGD_A_5(2NAP)
NAPA_DESDA
[Raw transfer]



SF4_A_3(3ML1)
NAPA_CUPNH
[Raw transfer]



SF4_A_3(3ML1)
NAPA_CUPNH
[Raw transfer]
101 HHSearch 90.0038% -68 * C3 *2NAP 10.7 NAPA_DESDA
2 PsiBlast_PDB 89.4936% -65 - C3 -2JIQ 11.4 NAPA_DESDA
1 PsiBlast_PDB 89.4736% -65 - C3 -2JIO 11.9 NAPA_DESDA
4 PsiBlast_PDB 89.0436% -67 - C3 -2NAP 10.7 NAPA_DESDA
3 PsiBlast_PDB 88.9736% -67 - C3 -2V3V 11.7 NAPA_DESDA
8 PsiBlast_PDB 88.8736% -64 - C3 -2V45 10.5 NAPA_DESDA
7 PsiBlast_PDB 88.7836% -66 - C3 -2JIR 11.6 NAPA_DESDA
6 PsiBlast_PDB 88.7436% -66 - C3 -2JIP 11.0 NAPA_DESDA
10 PsiBlast_PDB 88.3729% -59 - C3 -3ML1 4.2 NAPA_CUPNH
5 PsiBlast_PDB 88.2836% -65 - C3 -2JIM 11.2 NAPA_DESDA
9 PsiBlast_PDB 87.8030% -63 - C3 -2NYA - NAPA_ECOLI -
104 HHSearch 87.6032% -62 - C3 -3ML1 4.2 NAPA_CUPNH
11 PsiBlast_PDB 83.2730% -43 - C- -1OGY - NAPA_RHOS4 -
109 HHSearch 79.5425% -64 - C3 -1G8K - AIOA_ALCFA -
125 Fugue 78.8124% -58 - C3 -1G8K - AIOA_ALCFA -
14 PsiBlast_PDB 75.8327% -64 - C3 -4AAY - ? -
110 HHSearch 75.5620% -63 - C3 -2IVF - ? -
12 PsiBlast_PDB 73.7325% -62 - C3 -1G8K - AIOA_ALCFA -
127 Fugue 73.6323% -58 - C3 -2VPZ - ? -
102 HHSearch 73.5322% -66 - C3 -2E7Z - AHY_PELAE -