@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2567: (2016-02-09 )
MATPPYPEDEHSRQAYVDQLGLLEEGADEVFEEILAAATSYFQTPIALISILDHQRQWFRASIGLDIRQTPRRDSFCAYAILGKGVFEVADATLDPRFRDNPYVQGEPRIRFYAGAPLATAEGLNLGSLCVIDREPRGPLAERDVAMLEHFARLVMARIHTLRSTNYIDEPTGLYNRLRLQEDVSLRLQRDGALTVIAADLLPLALLNTIIRTLGYPFSNDLMLEARDRIRAELPDFTLYKISPTRFGLLLPRQQQEETESVCLRLLRAFESPVVCRGIPIKANVGLGVLPLADDTLDGDQDWLRLVVSAADDARDRGVGWARYNPPLDQAQQRAFTLLTSLSQAIGTEEGFHLVYQPKIDLPTGRCTGVEALLRWRHPQLGFVSPAEFVPLAEKTALMRPLSDWVLRHAMAQLAQWNARNIPLRLAINVSASDMEDSSFLEEAVRLAKTYDIDLSALELEFTESVLIRDASAVGSVLLRARELGMGIAVDDFGTGYSNWTYLRDLPITAIKLDQSFTRDLAGSPKAQSVTQAVIGLASQLGYRVVAEGIETHDTFHLLQAWGCHEGQGYLIAQPMLPEQLEDWLRR

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

C2E_A_4(4RNH)
?
[Raw transfer]



C2E_A_3(3N3T)
?
[Raw transfer]



C2E_A_3(4LJ3)
YAHA_ECOLI
[Raw transfer]



NACID_C_3(3U2E)
?
[Raw transfer]
-
C2E_A_4(3GFX)
?
[Raw transfer]



C2E_B_7(3GFX)
?
[Raw transfer]



C2E_A_3(3GG1)
?
[Raw transfer]



C2E_A_3(3GG0)
?
[Raw transfer]



C2E_B_7(3GG0)
?
[Raw transfer]



C2E_B_7(3GFZ)
?
[Raw transfer]



C2E_A_3(3GFZ)
?
[Raw transfer]



C2E_B_7(3GG1)
?
[Raw transfer]



EDO_A_11(4Q6J)
?
[Raw transfer]



EDO_A_7(4Q6J)
?
[Raw transfer]
2 PsiBlast_PDB 89.2632%-105 - C4 -4RNH 8.2 ?
3 PsiBlast_PDB 89.2232%-104 - C4 -4RNF - ? -
34 HHSearch 77.4822% -86 * C4 *3PJX - ? -
6 PsiBlast_PDB 75.6238%-102 - C4 -2R6O - ? -
7 PsiBlast_PDB 75.3538%-104 - C4 -3N3T 6.7 ?
36 HHSearch 74.6036%-102 - C4 -2R6O - ? -
10 PsiBlast_PDB 73.9133%-107 - C4 -4HJF - ? -
8 PsiBlast_PDB 73.6732%-112 - C4 -4HU3 - -
39 HHSearch 73.0335%-104 - C4 -3S83 - ? -
12 PsiBlast_PDB 72.7733%-106 - C4 -3S83 - ? -
5 PsiBlast_PDB 72.7738%-107 - C4 -4RNJ - ? -
11 PsiBlast_PDB 72.1933%-101 - C4 -3U2E 7.8 ?
4 PsiBlast_PDB 72.0038%-108 - C4 -4RNI - ? -
40 HHSearch 71.8631%-102 - C4 -3SY8 - ? -
55 Fugue 68.3423% -83 - C4 -3SY8 - ? -
23 PsiBlast_CBE 68.0735% -88 - C4 -3SY8 - ? -
21 PsiBlast_CBE 66.9735% -91 - C4 -3SY8 - ? -
22 PsiBlast_CBE 66.0635% -87 - C4 -3SY8 - ? -
13 PsiBlast_PDB 66.0235% -88 - C4 -3SY8 - ? -
9 PsiBlast_PDB 64.2132% -95 - C4 -4HU4 - DOSP_ECOLI -
17 PsiBlast_PDB 63.9930% -93 - C4 -4Q6J 3.4 ?
15 PsiBlast_PDB 60.0030% -73 - C4 -4LJ3 9.1 YAHA_ECOLI
29 PsiBlast_CBE 47.8136% -77 - C4 -3GFX 3.5 ?
27 PsiBlast_CBE 47.7536% -73 - C4 -3GG0 4.3 ?
28 PsiBlast_CBE 47.5736% -80 - C4 -3GFZ 5.2 ?
20 PsiBlast_PDB 46.9036% -69 - C4 -3GFZ 5.1 ?
26 PsiBlast_CBE 46.2336% -72 - C4 -3GG0 4.5 ?
24 PsiBlast_CBE 46.0636% -78 - C4 -3GG1 5.1 ?
19 PsiBlast_PDB 45.3036% -69 - C4 -3GFX 3.7 ?
25 PsiBlast_CBE 45.1936% -71 - C4 -3GG1 5.4 ?