@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3528: (2016-02-18 )
MSEDNFDDEFDGSLPSGPRHPMARRFRGYLPVVVDVETGGFNSATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVNRWKEMGGWMDDDD

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CHAIN_C_3(4KB1)
RNT_ECOLI
[Raw transfer]
-
U5P_A_4(2GUI)
DPO3E_ECOLI
[Raw transfer]



CHAIN_D_4(4KB1)
RNT_ECOLI
[Raw transfer]
-
TMP_A_4(1J54)
DPO3E_ECOLI
[Raw transfer]



NACID_C_3(4KB0)
RNT_ECOLI
[Raw transfer]
-
NACID_D_4(4KB0)
RNT_ECOLI
[Raw transfer]
-
NACID_F_6(3V9W)
RNT_ECOLI
[Raw transfer]
-
NACID_E_5(3V9W)
RNT_ECOLI
[Raw transfer]
-
NACID_E_5(3V9W)
RNT_ECOLI
[Raw transfer]
-
NACID_H_8(3V9W)
RNT_ECOLI
[Raw transfer]
-
NACID_G_7(3V9W)
RNT_ECOLI
[Raw transfer]
-
NACID_H_8(3V9U)
RNT_ECOLI
[Raw transfer]
-
NACID_H_8(3NH1)
RNT_ECOLI
[Raw transfer]
-
NACID_H_8(3V9X)
RNT_ECOLI
[Raw transfer]
-
NACID_B_2(4KAZ)
RNT_ECOLI
[Raw transfer]
-
NACID_H_8(3NH2)
RNT_ECOLI
[Raw transfer]
-
NACID_F_6(3V9X)
RNT_ECOLI
[Raw transfer]
-
NACID_C_3(3VA3)
RNT_ECOLI
[Raw transfer]
-
NACID_G_7(3V9X)
RNT_ECOLI
[Raw transfer]
-
NACID_E_5(3V9X)
RNT_ECOLI
[Raw transfer]
-
NACID_C_3(3VA0)
RNT_ECOLI
[Raw transfer]
-
NACID_D_4(3VA0)
RNT_ECOLI
[Raw transfer]
-
NACID_F_6(3NH1)
RNT_ECOLI
[Raw transfer]
-
NACID_E_5(3V9U)
RNT_ECOLI
[Raw transfer]
-
EDO_A_7(1J54)
DPO3E_ECOLI
[Raw transfer]



NACID_G_7(3NH2)
RNT_ECOLI
[Raw transfer]
-
NACID_G_7(3NH1)
RNT_ECOLI
[Raw transfer]
-
NACID_D_4(3VA3)
RNT_ECOLI
[Raw transfer]
-
NACID_F_6(3V9U)
RNT_ECOLI
[Raw transfer]
-
NACID_D_4(3V9S)
RNT_ECOLI
[Raw transfer]
-
NACID_G_7(3V9U)
RNT_ECOLI
[Raw transfer]
-
NACID_D_4(3NH2)
RNT_ECOLI
[Raw transfer]
-
NACID_E_5(3NH1)
RNT_ECOLI
[Raw transfer]
-
NACID_C_3(3V9Z)
RNT_ECOLI
[Raw transfer]
-
NACID_C_3(3NH2)
RNT_ECOLI
[Raw transfer]
-
NACID_D_4(3NH0)
RNT_ECOLI
[Raw transfer]
-
NACID_C_3(3V9S)
RNT_ECOLI
[Raw transfer]
-
NACID_D_4(3V9Z)
RNT_ECOLI
[Raw transfer]
-
NACID_C_3(3NH0)
RNT_ECOLI
[Raw transfer]
-
59 HHSearch 99.14100%-104 - C1 -2F96 - RNT_PSEAE -
1 PsiBlast_PDB 98.5897%-104 - C1 -2F96 - RNT_PSEAE -
33 PsiBlast_CBE 89.1663%-102 - C1 -3NH1 10.0 RNT_ECOLI
60 HHSearch 89.1160%-103 * C1 *3V9W 8.4 RNT_ECOLI
3 PsiBlast_PDB 88.8063%-100 - C1 -3NH1 8.3 RNT_ECOLI
26 PsiBlast_CBE 88.7963%-102 - C1 -3V9X 9.2 RNT_ECOLI
32 PsiBlast_CBE 88.7163%-101 - C1 -3NH1 9.0 RNT_ECOLI
15 PsiBlast_PDB 88.5962%-102 - C1 -3V9W 8.4 RNT_ECOLI
37 PsiBlast_CBE 88.4262%-102 - C1 -3V9W 8.5 RNT_ECOLI
34 PsiBlast_CBE 88.1463% -99 - C1 -3NH1 7.7 RNT_ECOLI
38 PsiBlast_CBE 88.1362%-103 - C1 -3V9W 8.6 RNT_ECOLI
12 PsiBlast_PDB 87.6462%-104 - C1 -3NGY - RNT_ECOLI -
14 PsiBlast_PDB 87.5962%-101 - C1 -3V9U 7.4 RNT_ECOLI
6 PsiBlast_PDB 87.5163%-100 - C1 -3V9X 8.2 RNT_ECOLI
25 PsiBlast_CBE 87.4663%-102 - C1 -3V9X 9.4 RNT_ECOLI
27 PsiBlast_CBE 87.4563% -97 - C1 -3V9X 8.7 RNT_ECOLI
9 PsiBlast_PDB 87.3163%-103 - C1 -4KAZ 7.9 RNT_ECOLI
29 PsiBlast_CBE 87.2863%-101 - C1 -3NH2 5.4 RNT_ECOLI
16 PsiBlast_PDB 87.2462%-101 - C1 -3VA3 7.5 RNT_ECOLI
11 PsiBlast_PDB 87.0163%-101 - C1 -4KB1 5.6 RNT_ECOLI
39 PsiBlast_CBE 86.8362%-101 - C1 -3V9W 8.4 RNT_ECOLI
21 PsiBlast_CBE 86.7463%-103 - C1 -4KB1 5.1 RNT_ECOLI
5 PsiBlast_PDB 86.7163%-100 - C1 -3V9S 8.4 RNT_ECOLI
7 PsiBlast_PDB 86.6863%-103 - C1 -3V9Z 8.1 RNT_ECOLI
2 PsiBlast_PDB 86.5463%-100 - C1 -3NH0 8.0 RNT_ECOLI
10 PsiBlast_PDB 86.4563%-101 - C1 -4KB0 5.1 RNT_ECOLI
4 PsiBlast_PDB 86.3863%-104 - C1 -3NH2 5.3 RNT_ECOLI
22 PsiBlast_CBE 86.3663%-101 - C1 -4KB0 5.1 RNT_ECOLI
24 PsiBlast_CBE 86.2063%-101 - C1 -3V9Z 7.4 RNT_ECOLI
8 PsiBlast_PDB 86.1763%-101 - C1 -3VA0 7.1 RNT_ECOLI
30 PsiBlast_CBE 86.1663%-100 - C1 -3NH2 6.2 RNT_ECOLI
41 PsiBlast_CBE 86.0662%-101 - C1 -3V9U 7.9 RNT_ECOLI
36 PsiBlast_CBE 85.8062% -99 - C1 -3VA3 7.7 RNT_ECOLI
28 PsiBlast_CBE 85.7763%-100 - C1 -3V9S 8.4 RNT_ECOLI
42 PsiBlast_CBE 85.6462%-100 - C1 -3V9U 8.5 RNT_ECOLI
23 PsiBlast_CBE 85.5163% -98 - C1 -3VA0 7.2 RNT_ECOLI
35 PsiBlast_CBE 85.1863%-100 - C1 -3NH0 8.3 RNT_ECOLI
40 PsiBlast_CBE 85.0162% -98 - C1 -3V9U 8.2 RNT_ECOLI
31 PsiBlast_CBE 84.7163%-103 - C1 -3NH2 5.8 RNT_ECOLI