@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3672: (2016-02-19 )
MIETRNLGKRFGSRVAVDDLSFQVETGEVLGFLGPNGAGKSTTMKMLTGFLAPCAGTASIFGFDIRNRTLQAQRLIGYLPEGSPCYAEMTVQGFLDFIAEIRGYRGAGKRERVARALGLLELDEVRRQTIETLSKGFRRRVGLAQAILHEPRALVLDEPTDGLDPNQKHQVRELIRGLAQERIVIISTHILEEVSALCSRALVIGGGRLLADSTPLELASRSRYHQAVTLYSDEPLDAVALAVLPGVAGIEENPAEGSLTVLAQPGAVIFPQVSGLVAERGWRIRELDVERGRLDEVFRNLTRGTEA

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_5(4QC2)
?
[Raw transfer]



ATP_A_3(4QC2)
?
[Raw transfer]



ATP_B_9(4P33)
LPTB_ECOLI
[Raw transfer]



ADP_B_5(4P32)
LPTB_ECOLI
[Raw transfer]



ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]



ADP_A_3(4P31)
LPTB_ECOLI
[Raw transfer]



ATP_C_3(1VCI)
?
[Raw transfer]



ADP_A_3(4YER)
?
[Raw transfer]
1 PsiBlast_PDB 82.6732%-107 - C1 -1VPL - ? -
46 HHSearch 81.3732%-108 - C1 -1VPL - ? -
22 PsiBlast_CBE 80.6535%-116 - C1 -4P32 7.4 LPTB_ECOLI
21 PsiBlast_CBE 78.6635%-104 - C1 -4QC2 7.8 ?
3 PsiBlast_PDB 77.9435%-110 - C1 -4P32 6.8 LPTB_ECOLI
4 PsiBlast_PDB 77.3535%-104 - C1 -4QC2 7.8 ?
23 PsiBlast_CBE 77.1234%-109 - C1 -4P33 8.2 LPTB_ECOLI
5 PsiBlast_PDB 77.1134%-112 - C1 -4P33 - LPTB_ECOLI -
8 PsiBlast_PDB 75.4531% -90 - C1 -2YYZ - ? -
6 PsiBlast_PDB 74.1933%-109 - C1 -4WBS - ? -
33 HHSearch 73.1432% -92 - C1 -2YYZ - ? -
24 PsiBlast_CBE 73.1433%-107 - C1 -4WBS - ? -
51 Fugue 71.0123% -91 - C1 -1Z47 - ? -
30 HHSearch 70.2732%-105 - C1 -1V43 - ? -
36 HHSearch 69.9127%-109 - C1 -3TUI - METN_ECOLI -
49 Fugue 69.0322% -92 - C1 -1OXS - ? -
9 PsiBlast_PDB 68.6128% -97 - C1 -2IT1 - ? -
37 HHSearch 68.0629%-108 - C1 -3D31 - ? -
50 Fugue 67.5927% -88 - C1 -2PJZ - ? -
12 PsiBlast_PDB 67.2630%-114 - C1 -4RVC - ? -
10 PsiBlast_PDB 66.2633% -95 - C1 -1VCI 4.1 ?
2 PsiBlast_PDB 57.4930% -8 - C1 -4YER 4.9 ?
7 PsiBlast_PDB 46.3935% -23 - C1 -4P31 6.8 LPTB_ECOLI