@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3746: (2016-02-20 )
MFENLTDRLSQTLRHVTGKAKLTEDNIKDTLREVRMALLEADVALPVVKDFVNKVKERAVGTEVSKSLTPGQAFVKIVRAELEELMGAANEDLALSVAPPAVILMAGLQGAGKTTTAGKLARFLKERKKKSVMVVSADVYRPAAIKQLETLAGEVGVTFFPSDVSQKPVAIAEAAIREARLKFIDVVIVDTAGRLHIDADMMDEIKQVHAAIKPAETLFVVDAMTGQDAANTAKAFNDALPLTGVVLTKVDGDARGGAALSVRAITGKPIKFLGMGEKSEALDPFHPDRVASRILGMGDVLSLIEQAEQNLDRDKAEKLAKKIKKGKGFDLEDFRDQLQQMKNMGGLGGLMDKLPMLGGVNLAQMGNAQGAAEKQFKQMEAIINSMTPGERRDPEMISGSRKRRIALGSGTQVQDVGRLIKQHKQMQKMMKKVTAKGGMAKMMRGMGSMFPGGMPKL

Atome Classification :

(46 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_C_14(4C7O)
SRP54_ECOLI
[Raw transfer]



GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]



GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]



GDP_B_17(3DM5)
SRP54_PYRFU
[Raw transfer]



GCP_B_6(1RJ9)
SRP54_THEAQ
[Raw transfer]



GDP_A_6(1O87)
SRP54_THEAQ
[Raw transfer]



GDP_B_11(4C7O)
FTSY_ECOLI
[Raw transfer]



GNP_B_20(2J7P)
SRP54_THEAQ
[Raw transfer]



GNP_A_12(2J7P)
SRP54_THEAQ
[Raw transfer]



GDP_D_17(4C7O)
FTSY_ECOLI
[Raw transfer]



GNP_A_6(1JPN)
SRP54_THEAQ
[Raw transfer]



GNP_B_5(1JPN)
SRP54_THEAQ
[Raw transfer]



GNP_B_2(1JPJ)
SRP54_THEAQ
[Raw transfer]



GDP_B_2(2NG1)
SRP54_THEAQ
[Raw transfer]



GDP_B_12(1O87)
SRP54_THEAQ
[Raw transfer]



CIT_B_4(1VMA)
?
[Raw transfer]



GDP_A_7(1NG1)
SRP54_THEAQ
[Raw transfer]



GDP_C_2(3E70)
?
[Raw transfer]



GDP_C_2(3E70)
?
[Raw transfer]



GCP_D_17(1OKK)
FTSY_THEAQ
[Raw transfer]



GOL_B_14(3DMD)
?
[Raw transfer]



GNP_K_11(2Q9C)
FTSY_THEAQ
[Raw transfer]



FMT_B_11(1O87)
SRP54_THEAQ
[Raw transfer]



GNP_T_20(2Q9B)
FTSY_THEAQ
[Raw transfer]



GCP_A_5(1RJ9)
SRP54_THEAQ
[Raw transfer]



GDP_B_11(4C7O)
SRP54_ECOLI
[Raw transfer]



GDP_D_17(4C7O)
SRP54_ECOLI
[Raw transfer]



GCP_D_17(1OKK)
SRP54_THEAQ
[Raw transfer]



GDP_D_2(2IYL)
FTSY_THEAQ
[Raw transfer]



EDO_A_12(3NG1)
SRP54_THEAQ
[Raw transfer]



ACY_B_7(1JPN)
SRP54_THEAQ
[Raw transfer]



EDO_B_14(3NG1)
SRP54_THEAQ
[Raw transfer]



EDO_A_2(2YHS)
FTSY_ECOLI
[Raw transfer]



EDO_A_2(2YHS)
FTSY_ECOLI
[Raw transfer]



GDP_D_18(4C7O)
SRP54_ECOLI
[Raw transfer]



GCP_B_6(1RJ9)
FTSY_THEAQ
[Raw transfer]



EDO_A_6(2J7P)
SRP54_THEAQ
[Raw transfer]



ACY_A_9(1JPN)
SRP54_THEAQ
[Raw transfer]



GCP_B_6(1RJ9)
FTSY_THEAQ
[Raw transfer]



GNP_B_20(2J7P)
FTSY_THEAQ
[Raw transfer]



GNP_A_12(2J7P)
FTSY_THEAQ
[Raw transfer]
68 HHSearch 92.6772%-104 - C- -2XXA - SRP54_ECOLI -
1 PsiBlast_PDB 91.4972% -92 - C7 -2XXA - SRP54_ECOLI -
21 PsiBlast_CBE 90.2972% -96 - C7 -2XXA - SRP54_ECOLI -
22 PsiBlast_CBE 87.1278%-104 - C7 -4C7O 7.4 SRP54_ECOLI
2 PsiBlast_PDB 84.8078%-103 - C7 -4C7O 3.0 SRP54_ECOLI
5 PsiBlast_PDB 77.0135% -86 - C7 -3DM5 Error SRP54_PYRFU
69 HHSearch 76.6144% -82 - C7 -2FFH - SRP54_THEAQ -
24 PsiBlast_CBE 76.4643% -81 - C7 -2FFH - SRP54_THEAQ -
70 HHSearch 76.4135% -84 - C7 -3DM5 Error SRP54_PYRFU
25 PsiBlast_CBE 76.2435% -86 - C7 -3DM5 7.2 SRP54_PYRFU
3 PsiBlast_PDB 76.1843% -78 - C7 -2FFH - SRP54_THEAQ -
23 PsiBlast_CBE 75.8743% -77 - C7 -2FFH - SRP54_THEAQ -
6 PsiBlast_PDB 75.5736% -82 - C7 -3NDB - SRP54_METJA -
27 PsiBlast_CBE 73.6446%-100 - C7 -2J46 - SRP54_THEAQ -
35 PsiBlast_CBE 72.5145% -93 - C7 -2CNW - SRP54_THEAQ -
18 PsiBlast_PDB 72.4745% -93 - C7 -2J7P 9.3 SRP54_THEAQ
26 PsiBlast_CBE 72.0246% -97 - C7 -2C03 - SRP54_THEAQ -
30 PsiBlast_CBE 71.9646% -89 - C7 -1O87 7.1 SRP54_THEAQ
11 PsiBlast_PDB 71.8645% -94 - C7 -1JPN 7.3 SRP54_THEAQ
29 PsiBlast_CBE 71.8546% -97 - C7 -2C04 - SRP54_THEAQ -
31 PsiBlast_CBE 71.5645% -94 - C7 -1JPN 6.5 SRP54_THEAQ
10 PsiBlast_PDB 71.4645% -92 - C7 -1JPJ 7.6 SRP54_THEAQ
33 PsiBlast_CBE 71.4445% -95 - C7 -2J7P 9.5 SRP54_THEAQ
16 PsiBlast_PDB 71.3845% -92 - C7 -1OKK 2.9 SRP54_THEAQ
15 PsiBlast_PDB 71.2745% -95 - C7 -3NG1 3.4 SRP54_THEAQ
9 PsiBlast_PDB 71.2746% -95 - C7 -1O87 7.3 SRP54_THEAQ
19 PsiBlast_PDB 70.9745% -91 - C7 -1NG1 7.4 SRP54_THEAQ
32 PsiBlast_CBE 70.6745% -95 - C7 -3NG1 3.4 SRP54_THEAQ
36 PsiBlast_CBE 69.2745% -89 - C7 -2NG1 6.2 SRP54_THEAQ
8 PsiBlast_PDB 67.8346% -89 - C7 -1RJ9 9.4 SRP54_THEAQ
79 HHSearch 67.4936%-100 - C7 -3E70 6.8 ?
81 HHSearch 67.4835% -96 - C7 -2YHS 2.9 FTSY_ECOLI
44 PsiBlast_CBE 67.1036% -93 - C7 -4C7O 7.3 FTSY_ECOLI
45 PsiBlast_CBE 66.0436% -89 - C7 -4C7O 7.0 FTSY_ECOLI
38 PsiBlast_CBE 64.9337%-100 - C7 -3E70 6.8 ?
46 PsiBlast_CBE 64.8835% -98 - C7 -2YHS 2.9 FTSY_ECOLI
40 PsiBlast_CBE 64.8437% -98 - C7 -3DMD 3.7 ?
88 HHSearch 64.0931%-103 - C7 -1RJ9 3.4 FTSY_THEAQ
47 PsiBlast_CBE 61.7742%-100 - C7 -1VMA 3.9 ?
59 PsiBlast_CBE 56.4137% -85 - C7 -2J7P 2.9 FTSY_THEAQ
64 PsiBlast_CBE 56.1936% -84 - C7 -1RJ9 2.9 FTSY_THEAQ
57 PsiBlast_CBE 55.8637% -82 - C7 -1OKK 7.4 FTSY_THEAQ
58 PsiBlast_CBE 55.5837% -86 - C7 -2J7P 2.9 FTSY_THEAQ
52 PsiBlast_CBE 54.0837% -89 - C7 -2Q9C 5.0 FTSY_THEAQ
60 PsiBlast_CBE 53.0537% -90 - C7 -2IYL 5.2 FTSY_THEAQ
54 PsiBlast_CBE 52.4837% -89 - C7 -2Q9B 4.3 FTSY_THEAQ