@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5045: (2016-03-04 )
MRLLKFLWWTCVTLICGVLLSFSGAYLYLSPSLPSVEALRNVQLQIPLKVYSEDGKLISEFGEMRRTPIRFADIPQDFIHALLSAEDDNFANHYGVDVKSLMRAAAQLLKSGHIQTGGSTITMQVAKNYFLTNERSFSRKINEILLALQIERQLTKDEILELYVNKIYLGNRAYGIEAAAQVYYGKPIKDLSLAEMAMIAGLPKAPSRYNPLVNPTRSTERRNWILERMLKLGFIDQQRYQAAVEEPINASYHVQTPELNAPYIAEMARAEMVGRYGSEAYTEGYKVITTVRSDLQNAASQSVRDGLIDYDQRHGYRGPETRLPGQTRDAWLKHLGQQRSIGGLEPAIVTQVEKSGIMVMTRDGKEEAVTWDSMKWARPFLSNNSMGPMPRQPADVAQAGDQIRVQRQEDGTLRFVQIPAAQSALISLDPKDGAIRSLVGGFSFEQSNYNRAIQAKRQPGSSFKPFIYSAALDNGFTAASLVNDAPIVFVDEYLDKVWRPKNDTNTFLGPIPLREALYKSRNMVSIRVLQGLGIERAISYITKFGFQRDELPRNFSLALGTATVTPMEIAGAWSVFANGGYKVNPYVIERIESRDGQVLYQANPPRVPVEEQVAADAEDAGNPGDPEHPESAEGEGSIEAQQVAAKAQTTFEPTPAERIIDARTAYIMTSMLQDVIKRGTGRRALALKRTDLAGKTGTTNDSKDGWFSGYNSDYVTSVWVGFDQPETLGRREYGGTVALPIWIRYMGFALKDKPMHTMAEPPGIVSLRIDPVTGRSAAPGTPGAYFEMFKNEDTPPSVNELPPGSFPGSPLPDDEGAPIDLF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

2U4_A_2(4OON)
PBPA_PSEAE
[Raw transfer]



CB9_B_3(3ZGA)
?
[Raw transfer]



DXF_A_3(3ZG9)
?
[Raw transfer]



AIX_B_3(3ZG8)
?
[Raw transfer]



PNM_A_3(3UDI)
?
[Raw transfer]



GOL_B_4(3ZG7)
?
[Raw transfer]



TLA_B_3(3ZG7)
?
[Raw transfer]



MES_F_4(2V2F)
?
[Raw transfer]
1 PsiBlast_PDB 94.84100% -75 - C2 -4OON 4.5 PBPA_PSEAE
53 Fugue 82.2247% -69 - C2 -3UDI 3.9 ?
29 HHSearch 76.2027% -70 * C2 *2OLV - ? -
54 Fugue 68.4525% -54 - C2 -2OLU - ? -
30 HHSearch 66.6531% -62 - C2 -3ZG9 - ? -
18 PsiBlast_PDB 55.0729% -51 - C2 -3ZG7 3.2 ?
11 PsiBlast_PDB 54.8730% -57 - C2 -3VMA - PBPB_ECOLI -
4 PsiBlast_PDB 54.6449% -78 - C2 -3NB7 - PBPA_AQUAE -
8 PsiBlast_PDB 53.8830% -50 - C2 -3ZG8 4.6 ?
9 PsiBlast_PDB 53.2730% -46 - C2 -3ZGA 2.9 ?
10 PsiBlast_PDB 53.2330% -48 - C2 -3ZG9 3.4 ?
2 PsiBlast_PDB 52.7549% -77 - C2 -3NB6 - PBPA_AQUAE -
7 PsiBlast_PDB 52.5834% -68 - C2 -2OLV - ? -
6 PsiBlast_PDB 52.3834% -76 - C2 -2OLU - ? -
33 HHSearch 50.8948% -79 - C2 -2OQO - PBPA_AQUAE -
37 HHSearch 50.8428% -50 - C2 -2V2F 2.5 ?
3 PsiBlast_PDB 50.6849% -76 - C2 -2OQO - PBPA_AQUAE -
31 HHSearch 50.3524% -40 - C2 -2Y2M - ? -
57 Fugue 50.1750% -75 - C2 -2OQO - PBPA_AQUAE -
16 PsiBlast_PDB 49.2137% -67 - C2 -3VMS - MGT_STAAM -