@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5296: (2016-03-06 )
MSRLNPRQQEAVNYVGGPLLVLAGAGSGKTSVITRKIAYLVQQCGIRAQYIVAVTFTNKAAREMKERVGTLLRGGEGKGLTVSTFHNLGLNIIRKEHERLGYKPGFSIFDESDIKALLTDIMQKEYSGDDGVDEIKNYIGAWKNDLILPEEALEKARNPKEQTAAIVYLHYQRTLRAYNAVDFDDLILQPVKLFQEHPDVLQKWQNKVRYMLVDEYQDTNASQYLLVKLLVKDRAQFTVVGDDDQSIYAWRGARPENLMQLKEDFPSLKVVMLEQNYRSTSRILKCANVLIANNPHVFEKQLWSEMGHGDPIRVIRCRNEDAEAERIAMEILTLHLRTERPYSEFAILYRGNHQAKLMELKLQHHQIPYRLSGGTSFFGRQEVKDLMSYFRLLVNPDDDNAFLRVINVPRREIGSATLEKLGNYATQRKISMYAACDEMGLAEHLDSRFHERLQRFKRWMDGIRRQCAENEPIAVLRSMVMDIDYENWLRQNASSDKVAEFRMSNVWFLIEALKNTLERDEEGDMTIEQAIAKLVLRDMLERQQEEEEGAEGVQMMTLHASKGLEFPYVFIMGMEEEILPHRSSIEADTVEEERRLAYVGITRARQNLAMTFAAKRKQYGEIIDCSPSRFLDELPPEDLEWEGMEDAPQEVKAAKGNAALADIRAMLKR

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_C_1(1UAA)
REP_ECOLI
[Raw transfer]
-
NACID_D_2(2PJR)
?
[Raw transfer]
-
NACID_D_2(2PJR)
?
[Raw transfer]
-
NACID_Y_1(3PJR)
?
[Raw transfer]
-
NACID_C_1(1UAA)
REP_ECOLI
[Raw transfer]
-
NACID_E_3(2IS1)
UVRD_ECOLI
[Raw transfer]
-
NACID_C_1(1UAA)
REP_ECOLI
[Raw transfer]
-
NACID_C_1(2PJR)
?
[Raw transfer]
-
NACID_C_1(1UAA)
REP_ECOLI
[Raw transfer]
-
NACID_C_1(2PJR)
?
[Raw transfer]
-
NACID_C_1(2IS1)
UVRD_ECOLI
[Raw transfer]
-
CHAIN_M_5(4C2T)
?
[Raw transfer]
-
CHAIN_X_3(4C2U)
?
[Raw transfer]
-
CHAIN_Y_4(4C2U)
?
[Raw transfer]
-
1 PsiBlast_PDB 97.9654% -97 - C6 -1UAA 10.4 REP_ECOLI
36 HHSearch 96.8655% -91 - C6 -1UAA 10.3 REP_ECOLI
21 PsiBlast_CBE 96.5254% -96 - C6 -1UAA 10.5 REP_ECOLI
57 Fugue 96.3454% -91 - C6 -1UAA 10.3 REP_ECOLI
27 PsiBlast_CBE 90.9238% -79 - C6 -4C2U 10.6 ?
8 PsiBlast_PDB 90.5038% -79 - C6 -4C2U 5.7 ?
4 PsiBlast_PDB 89.8339% -87 - C6 -2IS1 11.3 UVRD_ECOLI
23 PsiBlast_CBE 89.7138% -82 - C6 -4C2T - ? -
24 PsiBlast_CBE 89.5538% -88 - C6 -4C30 - ? -
7 PsiBlast_PDB 89.3238% -82 - C6 -4C2T 6.5 ?
26 PsiBlast_CBE 89.2838% -84 - C6 -4C30 - ? -
5 PsiBlast_PDB 89.0939% -87 - C6 -2IS2 - UVRD_ECOLI -
9 PsiBlast_PDB 87.5338% -80 - C6 -4C30 - ? -
25 PsiBlast_CBE 87.2738% -78 - C6 -4C30 - ? -
6 PsiBlast_PDB 87.1739% -80 - C6 -2IS6 - UVRD_ECOLI -
2 PsiBlast_PDB 87.0941% -85 - C6 -3PJR 7.3 ?
22 PsiBlast_CBE 87.0739% -84 - C6 -2IS1 8.4 UVRD_ECOLI
3 PsiBlast_PDB 85.9141% -85 - C6 -1PJR - PCRA_GEOSE -
35 HHSearch 84.5240% -85 - C6 -1PJR - PCRA_GEOSE -
38 HHSearch 78.0623% -82 - C6 -3U4Q - ADDA_BACSU -
10 PsiBlast_PDB 71.5444% -83 - C6 -2PJR 11.8 ?
28 PsiBlast_CBE 70.8444% -77 - C6 -2PJR 10.9 ?
30 PsiBlast_CBE 36.5057% -16 - C6 -2PJR 3.2 ?
31 PsiBlast_CBE 36.0957% -18 - C6 -2PJR 4.9 ?