@TOME V3
(Feb 2022)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Arcadia_114360T0_kcl62: (2019-03-28 )
CEVLISKKSGGDGPVKSSCIPKSGSKVIVVNGKTVTVSADGSCKFSSKD
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..-.-....---..10..------....-----...20.-...-----....30.-------.---.---......40---.........
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C
E
-
V
-
L
I
SK---KSG-GD------GPVK-----SSCIPK-SG
S
-----
K
V
I
V
V-N-------G---
K
---
T
V
T
V
SAD----G
S
C
KFSSKD
34
Fugue
68.10
20%
-93
- C4 -
0.48
5I4A
-
?
A:
[4-642]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AYLNLYKIDIPKKIKRLYFYNPDMEPKLFARNLSRVNNFKFQDSNDLVWIEIPDIDFQITPKNVFQYKVEKEEIIKEEEDKKLFVKTLYKYIKKLFLDNDFYFKKGNNFISNSEVFSLDSNENVNAHLTYKIKIHNISNEYYLSILPKFTFLSKEPALESAIK
S
G
-
Y
-
L
Y
N
I
---
K
S
G
-
K
S
------
F
P
Y
I
-----
S
G
L
-----
D
G
-----
I
L
K
I
D
-
I
-------
N
---
Q
---
I
V
E
V
A
Y
P
----
E
N
Y
L
F
N
F
T
T
32
Fugue
65.22
23%
-31
- C4 -
0.54
2MM2
-
?
A:
[1-65]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N
C
T
-
A
-
N
I
L
N
---
I
N
E
-
V
--------
V
I
A
-----
T
G
C
V
P
A
-
G
G
N
-----
L
I
I
R
V
G
S
-------
D
---
H
---
S
Y
L
I
R
A
T
----
V
S
C
G
L
S
L
N
P
38
Fugue
61.62
23%
-43
- C6 -
0.43
2JAX
2
Y2623_MYCTU
A:
[8-294]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSRWQQDHGRHLIDDALKVVEQASLRAGPPTVHSEIVPAAAVPTLVDMSKD
A
V
-
L
M
V
V
G
C
---
L
G
S
-
G
R
WPGRLL
G
S
V
S
-----
S
G
L
L
R
H
-
A
H
C
-----
P
V
V
I
I
-
H
-------
D
---
A
---
P
V
L
V
G
V
D
----
G
S
S
--
A
S
E
L
41
Fugue
59.65
25%
-7
- C5 -
-
5DL8
3
?
A:
[17-407]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NPNQQTEDEWKFTLKNAYINRDFDNDALKDTGSWSQ
A
A
-
S
-
L
F
Y
K
----------------------------
S
K
-
M
H
D
-----
T
P
L
V
I
-
A
-------
D
---
K
---
P
I
T
I
G
A
D
----
A
S
V
Q
Y
A
V
R
L
35
Fugue
57.95
22%
12
- C4 -
0.62
2JN4
-
?
A:
[1-66]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
-
V
-
M
I
R
K
---
T
A
T
-
G
----------
H
-----
S
A
Y
V
A
K
-
K
D
L
-----
E
E
L
I
V
-
E
MENPALW
G
---
G
---
K
V
T
L
A
N
G
----
W
Q
L
E
L
P
A
M
A
52
SP3
57.47
18%
94
- C4 -
0.37
1EEJ
-
DSBC_ECOLI
A:
[1-60]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
-
A
-
A
I
Q
Q
TLA
K
M
G
I
K
S
------
S
D
I
Q
-----
P
A
--
P
V
-
A
G
M
-----
K
T
V
L
T
-
N
-------
S
---
G
---
V
L
Y
I
T
D
D
----
G
K
H
I
I
Q
G
P
M
53
SP3
56.53
16%
140
* C4 *
0.37
1EX4
2
?
A:
[174-221]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
-
R
V
Y
Y
---
R
D
S
-
R
N
SLWK--
G
P
A
K
-------
L
L
W
K
-
G
E
G
-----
A
V
V
I
Q
-
D
-------
N
---
S
---
D
I
K
V
V
P
R
----
R
K
A
K
I
-
I
R
D
5
PsiBlast_PDB
56.22
48%
51
- C3 -
3HNF
2
RIR1_HUMAN
A:
[240-283]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
S
K
---
S
A
G
-
G
I
------
G
-
V
A
-----
V
S
C
I
R
A
-
T
G
S
-----
Y
I
A
G
T
-
N
-------
G
---
N
---
S
-------------------
2
PsiBlast_PDB
56.18
48%
58
- C3 -
3HNC
2
RIR1_HUMAN
A:
[240-284]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
S
K
---
S
A
G
-
G
I
------
G
-
V
A
-----
V
S
C
I
R
A
-
T
G
S
-----
Y
I
A
G
T
-
N
-------
G
---
N
---
S
-------------------
1
PsiBlast_PDB
55.82
48%
46
- C3 -
2WGH
2
RIR1_HUMAN
A:
[167-218]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
S
K
---
S
A
G
-
G
I
------
G
-
V
A
-----
V
S
C
I
R
A
-
T
G
S
-----
Y
I
A
G
T
-
N
-------
G
---
N
---
S
-------------------
47
Fugue
55.51
24%
27
* C6 *
-
1O89
-
ACUI_ECOLI
A:
[1-323]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LQALLLEQQTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSEDPRFHAGQEVLLTGWGVGENHWGGLAEQARVKGDWLVAMPQGLDARKAMIIGTAGFTAMLCVMALEDAGVRPQD
G
E
-
I
-
V
V
T
G
---
A
S
G
-
G
V
------
G
S
T
A
-----
V
A
L
L
H
K
-
L
G
Y
-----
Q
V
V
A
V
-
S
-------
G
RES
T
---
H
E
Y
L
K
S
L
----
G
A
S
R
V
L
P
R
D
8
PsiBlast_PDB
55.41
48%
77
- C3 -
5D1Y
-
RIR1_HUMAN
A:
[240-284]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
S
K
---
S
A
G
-
G
I
------
G
-
V
A
-----
V
S
C
I
R
A
-
T
G
S
-----
Y
I
A
G
T
-
N
-------
G
---
N
---
S
-------------------
37
Fugue
55.27
28%
59
- C2 -
-
1BYR
-
?
A:
[2-153]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EPSVQVGYSPEGSARVLVLSAIDSAKTSIRMMAYSFTAPDIMKALVAAKKRGVDVKIVIDERGNTGRASIAAMNYIANSG
I
P
-
L
-
R
T
D
S
---
N
F
-----------------------
P
I
-
Q
H
D
-----
K
V
I
I
V
-
D
-------
N
---
V
---
T
V
E
T
-------
G
S
F
N
F
T
K
A
A
7
PsiBlast_PDB
54.86
48%
84
* C3 *
5TUS
2
RIR1_HUMAN
A:
[240-281]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
S
K
---
S
A
G
-
G
I
------
G
-
V
A
-----
V
S
C
I
R
A
-
T
G
S
-----
Y
I
A
G
T
-
N
-------
G
---
N
---
S
-------------------
39
Fugue
53.75
26%
-9
- C4 -
-
5HCC
1
?
D:
[16-62]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
E
E
V
-
I
C
H
R
---
K
L
N
-
H
L
------
G
E
R
V
-----
T
S
G
C
P
T
-
G
C
L
-----
C
V
I
---
R
-------
E
---
P
---
D
N
V
D
N
A
N
----
G
T
C
Y
A
L
M
S
-
9
PsiBlast_PDB
52.39
48%
85
- C3 -
0.20
6AUI
3
RIR1_HUMAN
A:
[260-289]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
S
K
---
S
A
G
-
G
I
------
G
-
V
A
-----
V
S
C
I
R
A
-
T
G
S
-----
Y
I
A
G
T
-
N
-------
G
---
N
---
S
-------------------
3
PsiBlast_PDB
52.06
48%
98
- C3 -
0.21
3HND
3
RIR1_HUMAN
A:
[240-269]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
S
K
---
S
A
G
-
G
I
------
G
-
V
A
-----
V
S
C
I
R
A
-
T
G
S
-----
Y
I
A
G
T
-
N
-------
G
---
N
---
S
-------------------
4
PsiBlast_PDB
51.55
48%
81
- C3 -
3HNE
2
RIR1_HUMAN
A:
[240-283]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
I
S
K
---
S
A
G
-
G
I
------
G
-
V
A
-----
V
S
C
I
R
A
-
T
G
S
-----
Y
I
A
G
T
-
N
-------
G
---
N
---
S
-------------------
43
Fugue
51.24
26%
31
- C5 -
-
3WKX
1
HYBA1_BIFL2
A:
[1-659]
MNVTITSPFWKRRRDQIVESVIPYQWGVMNDEIDTTVPDDPAGNQLADSKSHAVANLKVAAGELDDEFHGMVFQDSDVYKWLEEAAYALAYHPDPELKALCDRTVDLIARAQQSDGYLDTPYQIKSGVWADRPRFSLIQQSHEMYVMGHYIEAAVAYHQVTGNEQALEVAKKMADCLDANFGPEEGKIHGADGHPEIELALAKLYEETGEKRYLTLSQYLIDVRGQDPQFYAKQLKAMNGDNIFHGFYKPTYFQAAEPVRDQQTADGHAVRVGYLCTGVAHVGRLLGDQGLIDTAKRFWKNIVTRRMYVTGAIGSTHVGESFTYDYDLPNDTMYGETCASVAMSMFAQQMLDLEPKGEYADVLEKELFNGSIAGISLDGKQYYYVNALETTPDGLDNPDRHHVLSHRVDWFGCACCPANIARLIASVDRYIYTERDGGKTVLSHQFIANTAEFASGLTVEQRSNFPWDGHVEYTVSLPASATDSSVR
F
G
-
L
-
R
I
P
G
---
W
S
R
-
G
S
------
Y
T
L
T
-----
V
N
G
K
P
A
-
V
G
S
LEDGF
V
Y
L
V
V
-
N
-------
A
GDT
L
---
E
I
A
L
E
L
D
----
M
S
V
K
F
V
R
A
N
46
Fugue
50.89
26%
91
- C6 -
-
1QKF
-
RS19_THETH
A:
[8-80]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GVFVDDHLL
E
K
-
V
-
L
E
L
N
---
A
K
G
-
E
K
------
R
L
I
K
TWSRR
S
T
I
V
P
E
M
V
G
H
-----
T
I
A
V
Y
-
N
-------
G
---
K
QHV
P
V
Y
I
T
E
N
MVGH
K
L
G
E
F
A
P
T
R