@TOME V3
(Feb 2022)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Arcadia_118380T0_kcl44: (2019-03-28 )
SSPAVKFQGYCCKYTIMPGNRVWIVKSGTEHMFEHNGKKYNVMAYDRCNLVWPAWGKKGGPEGFTFEYE
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------....--....----------.----10-----.--....-.--.----------.-.------20----..---.....--..------30----...-.--------.----...40...-----....-..50..-......60--.---...-----------.----....
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------SSP
A
--
V
K
F
Q----------G----
Y
------
C
--
C
K
Y
T
-I--M----------P-G------
N
-----
R
V
---
W
I
V
KS--GT------
E
H
----
M
F
E
-H--------N----G
K
K
Y
-
N
V
M
-----
A
Y
DR-C
N
L
VWP-AWGKKGG---P---EG
F
-----------
T
----FEYE
68
SP3
76.00
24%
49
- C- -
-
1TEN
-
?
?:
[803-891]
----------------------------------------------------------------------------------------------------------------------------------------LDAPSQIEVKDVTDTTALITW
F
K
P
L
--
A
E
I
D
----------
G
----
I
------
E
--
L
T
Y
G
-
I
--
K
DV--------
P
-
G
------
D
-----
R
T
---
T
I
D
L
T
--
E
D
------
E
N
----
Q
Y
S
I
G
--------
N
LKP-
D
T
E
Y
-
E
V
S
-----
L
I
S
R
-
R
G
-------
D
M
S
S
N
---
P
AK-
E
T
F
-----------
T
----
T
---
8
Fugue
75.78
26%
40
- C5 -
0.31
2MYW
-
?
A:
[7-85]
------------------------------------------------------------------------------------------------------------------------------------------------------------S
G
R
E
N
--
L
Y
F
Q
----------
G
----
H
MAAPAR
F
--
C
V
Y
Y
-
D
GH
L
----------
P
-
A
------
T
-----
R
V
---
L
L
M
Y
V
RI
G
T
------
T
A
----
T
I
T
-
A
--------
R
----
G
H
E
F
-
E
V
E
-----
A
K
D
Q
N
C
K
V
I
L
T
---
N
G
K
Q
A
---
P
---
D
W
L
-----------
A
----
A
E
P
Y
3
PsiBlast_PDB
69.42
32%
-72
- C6 -
-
4P8T
2
DPRE1_MYCTU
A:
[295-351]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
P
D
--
V
F
P
N
----------
G
----
L
------
A
--
N
K
Y
T
-
F
--
G
----------
P
-
I
------
G
-----
E
L
---
W
Y
R
K
S
--
G
T
----------------
Y
--------
R
----
G
K
V
Q
-
N
L
T
-----
Q
F
Y
H
-
P
L
D
M
F
G
-
E
W
N
R
A
Y
G
---
P
---
A
G
F
--------------------
2
PsiBlast_PDB
69.19
32%
-46
- C6 -
-
4P8L
1
DPRE1_MYCTU
A:
[295-351]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
P
D
--
V
F
P
N
----------
G
----
L
------
A
--
N
K
Y
T
-
F
--
G
----------
P
-
I
------
G
-----
E
L
---
W
Y
R
K
S
--
G
T
----------------
Y
--------
R
----
G
K
V
Q
-
N
L
T
-----
Q
F
Y
H
-
P
L
D
M
F
G
-
E
W
N
R
A
Y
G
---
P
---
A
G
F
--------------------
4
PsiBlast_PDB
67.62
32%
-44
- C6 -
-
5OEL
1
?
A:
[292-348]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
P
D
--
V
F
P
N
----------
G
----
L
------
A
--
N
K
Y
T
-
F
--
G
----------
P
-
I
------
G
-----
E
L
---
W
Y
R
K
S
--
G
T
----------------
Y
--------
R
----
G
K
V
Q
-
N
L
T
-----
Q
F
C
H
-
P
L
D
M
F
G
-
E
W
N
R
A
Y
G
---
P
---
A
G
F
--------------------
67
SP3
66.90
20%
69
- C5 -
1OAC
-
AMO_ECOLI
A:
[5-88]
-------------------------------------------------------------------------------------------------------------------------------------------------AHMVPMDKTLKE
F
G
A
D
--
V
Q
W
D
----------
D
----
Y
------
A
--
Q
L
F
T
-
L
--
I
----------
K
-
D
------
G
-----
A
Y
---
V
K
V
K
P
--
G
A
------
Q
T
----
A
-
I
-
V
--------
N
----
G
Q
P
L
-
A
L
Q
-----
V
---------
P
-
V
V
M
K
D
N
K
AWV
S
---
D
T
F
INDVFQSGLDQ
T
----
F
Q
V
E
1
PsiBlast_PDB
66.59
32%
-87
- C6 -
-
4P8C
1
DPRE1_MYCTU
A:
[295-351]
---------------------------------------------------------------------------------------------------------------------------------------------------------------
P
D
--
V
F
P
N
----------
G
----
L
------
A
--
N
K
Y
T
-
F
--
G
----------
P
-
I
------
G
-----
E
L
---
W
Y
R
K
S
--
G
T
----------------
Y
--------
R
----
G
K
V
Q
-
N
L
T
-----
Q
F
Y
H
-
P
L
D
M
F
G
-
E
W
--
A
Y
G
---
P
---
A
G
F
--------------------
66
SP3
65.87
15%
22
* C5 *
0.20
1QR4
-
TENA_CHICK
A:
[88-175]
----------------------------------------------------------------------------------------------------------------------------------------VGSPKGISFSDITENSATVSW
T
P
P
R
--
S
R
V
D
----------
S
----
Y
------
R
--
V
S
Y
V
-
P
--
I
----------
T
-
G
------
G
TP---
N
V
---
V
T
V
D
G
--
S
K
------
T
R
----
T
K
L
-
V
--------
K
LVP-
G
V
D
Y
-
N
V
N
-----
I
I
S
V
-
K
G
-------
F
E
E
S
E
---
P
---
I
S
G
-----------
I
----
L
K
T
-
63
SP3
62.64
20%
-71
- C5 -
0.01
1DCJ
-
TUSA_ECOLI
A:
[1-81]
--------------------------------------------------------------------------------------------------------------------------------------------------------MTDLF
S
S
P
D
HT
L
D
A
L
----------
G
----
L
------
R
--
C
P
E
P
-
V
--
M
MVRKTVRNMQ
P
-
G
------
E
-----
T
L
---
L
I
I
A
D
--
D
P
ATTRDI
P
G
----
F
C
T
-
F
--------
M
----
E
--
H
-
E
L
V
-----
A
K
E
T
-
D
G
L
P
Y
R
-
Y
L
I
R
K
G
G
------------------------------
17
Fugue
58.10
23%
-28
- C5 -
0.15
1XKP
-
YSCB_YERPE
C:
[2-127]
---------------------------------------------------------------------------------------------------------------------------------------------------QNLLNLAASL
G
R
P
F
--
V
A
D
Q
----------
G
---------------
V
Y
R
-
L
--
T
----------
I
-
D
------
H
-----
L
V
---
M
L
A
P
H
--
G
S
------
E
L
----
V
L
R
-
T
PIDAPMLR
E
----
G
N
N
V
-
N
V
T
-----
L
L
R
S
-
L
M
Q
Q
A
L
-
A
W
A
K
R
Y
----
P
---
Q
T
L
-----------
V
----
L
D
D
C
62
SP3
58.05
18%
94
- C5 -
0.21
1QR4
-
TENA_CHICK
A:
[1-87]
-----------------------------------------------------------------------------------------------------------------------------------------DNPKDLEVSDPTETTLSLRW
R
R
P
V
--
A
K
F
D
----------
R
----
Y
------
R
--
L
T
Y
V
-
S
--
P
----------
S
-
G
------
K
-----
K
N
---
E
M
E
I
P
--
V
D
------
S
T
----
S
F
I
-
L
--------
R
GLDA
G
T
E
Y
-
T
I
S
-----
L
V
A
E
-
K
G
-------
R
H
K
S
K
---
P
TTI
K
G
S
-----------
T
----
V
---
12
Fugue
57.34
20%
-29
* C8 *
-
1IW4
-
ITRP_HALRO
A:
[1-55]
------------------------------------------------------------------------------------------------------------------------------------------------------------A
H
M
D
C
--
T
E
F
N
----------
P
----
L
------
C
R-
C
N
K
-----
M
----------
L
-
G
------
D
-----
L
I
---
C
A
V
I
G
--
D
A
------
K
E
----
E
H
R
-
N
--------------------------
M
C
A
L
-
C
C
E
----------
H
---
P
---
G
G
F
-----------
E
----
Y
S
N
G
19
Fugue
56.95
13%
43
- C5 -
0.27
1M42
-
COPC_PSEUB
A:
[1-102]
---------------------------------------------------------------------------------------------------------------------------------------------HPKLVSSTPAEGSEGA
A
P
A
K
--
I
E
L
H
FSENLVTQFS
G
----
A
------
K
--
L
V
M
T
-
A
--
M
----------
P
-
G
------
M
-----
E
H
---
S
P
M
A
V
--
K
A
------
A
V
----
S
G
G
-
G
--------
D
----
P
K
T
M
-
V
I
T
PASPL
T
A
G
T
-
Y
K
V
D
W
R
-
A
V
S
S
D
T
H
---
P
---
I
T
G
-----------
S
----
V
T
F
K
13
Fugue
55.02
15%
-19
- C5 -
0.30
2MM2
-
?
A:
[1-65]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
C
T
A
N
-
I
--
L
----------
N
-
I
------
N
EVVIA
T
G
---
C
V
P
A
G
--
G
N
------
L
I
----
I
R
V
-
G
--------
S
----
D
H
S
Y
-
L
I
R
-----
A
T
V
S
-
C
G
L
S
L
N
---
P
S
Q
S
F
---
I
---
N
G
E
-----------
S
----
L
A
S
G
7
PsiBlast_PDB
54.92
36%
-20
* C9 *
-
2DMO
-
A:
[26-68]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
--
M
----------
P
-
G
------
N
-----
I
V
---
F
V
L
K
K
--
G
N
------
D
N
WATV
M
F
-----------
N
----
G
Q
K
G
-
L
V
---------
P
-
C
N
Y
L
E
P
-
V
S
G
P
S
S
G
------------------------------
61
SP3
53.09
26%
-31
- C8 -
-
1IML
-
?
?:
[29-76]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
------
C
EK
C
G
K
T
-
L
--
T
----------
S
-
G
------
G
--------------------------
H
----
A
-
E
-
H
--------
E
----
G
K
P
Y
C
N
H
P
-----
C
Y
S
A
---
M
F
G
P
-
K
G
F
G
R
G
G
---
A
---
E
S
H
-----------
T
----
F
K
--
60
SP3
52.91
23%
49
- C4 -
-
1IHR
-
TONB_ECOLI
A:
[2-74]
------------------------------------------------------------------------------------------------------------------------------------------------------------A
R
A
Q
A
--
L
R
I
E
----------
G
----
Q
V-----
K
--
V
K
F
D
-
V
--
T
----------
P
D
G
------
R
VD---
N
V
---
Q
I
L
S
A
--
K
P
------
A
N
----
M
F
E
-
R
--------
E
----
V
K
N
---
A
M
-----
R
R
W
R
-
Y
E
---
P
-
G
K
P
G
S
G
I
---
V
---
V
N
I
-----------
L
----
F
K
I
N
10
Fugue
52.73
24%
102
- C6 -
-
4OC8
-
?
A:
[2-388]
TFFTGETLGQVDLIVDAVYAGYKTERGGMADPLVPLVGVSRQGGFRYRGTRERPTLLVLTSNLAEPEWPDQLDETTGTFIYYGDNRHPGRLLHDTPRFGNQLLRQIFDWAHLGQRHLVPPILVFTTEATGRTFRFRGLAVPGSPALAATEDLVALWK
T
T
E
G
--
Q
R
F
Q
----------
N
----
Y
------
K
--
A
V
F
T
-
I
--
L
----------
D
-
E
------
A
-----
V
I
PRA
W
V
H
A
V
--
G
R
------
G
-------
E
-
T
--------
S
----
G
L
A
----------------
P
V
A
W
N
-
A
W
L
S
A
G
G
---
I
---
R
P
L
-----------
M
----
A
P
R
S
65
SP3
50.98
13%
96
- C10 -
-
2BB2
2
?
?:
[1-90]
-----------------------------------------------------------------------------------------------------------------------------------------------------LNPKIIIF
E
Q
E
N
----
F
Q
----------
G
----
H
------
S
--
H
E
L
N
G
P
--
C
----------
P
-
N
LKETGV
E
-----
K
A
GS-
V
L
V
Q
A
--
G
P
------
W
V
----
G
Y
E
-
Q
--------
A
----
N
C
K
G
-
E
Q
F
-----
V
F
E
K
-
G
E
Y
P
R
W
D
S
W
T
S
S
R
R
---
T
---
D
S
L
-----------
S
SLRP
I
K
V
D
16
Fugue
49.77
18%
25
- C5 -
0.14
5LW8
-
A:
[1-92]
--------------------------------------------------------------------------------------------------------------------------------------------SNEFLMKIQTAISSKNR
Y
P
K
M
--
A
Q
I
R
----------
G
IEGE
V
------
L
--
V
S
F
T
-
I
--
N
----------
A
-
D
------
G
-----
S
V
TDI
K
V
V
K
S
--
N
T
------
T
D
----
I
L
N
-
H
--------
A
----
A
L
E
A
-
I
K
S
-----
A
A
H
L
-----
F
P
-
K
-
P
E
E
T
V
---
H
---
L
K
I
-----------
P
----
I
A
Y
S