@TOME V3
(Feb 2022)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : BR29_102750T0_kcl24: (2019-03-28 )
QKCIITIRKADPALGQDTLYDLVSLAPNSDLTFGKIPASMTEVTFGVDEKCQARLVRGDLSRPYEYKGMQ
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------...-------......10........20...-...--.-------.30...--...---...------------40....---....-50-----------...----....-----------..-----60..--......70
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
K
C
-------
I
I
T
I
RKADPAL
G
Q
D
T
L
Y
D
L
V
S-LAP--N-------SD-LTF--GKI---PAS------------
M
T
E
V
T
F---GV
D
E
-
K
------------
C
Q
A
----
R
L
V
R-----------GD-----LSRP--YEYKGMQ
59
SP3
74.20
14%
-130
* C5 *
0.42
1H6K
-
NCBP2_HUMAN
X:
[38-118]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
C
-------
T
L
Y
V
G
N
L
S
F
Y
T
T
E
E
Q
I
Y
E
L
F
S
------------------
K
S
--
G
D
I
-------------------
K
K
I
I
M
---
G
L
D
K
-
M
------------
C
G
F
----
C
F
V
E
YYSRADAENAM
R
Y
-----
I
N
G
---
T
R
L
D
D
R
I
45
Fugue
60.28
27%
-181
- C5 -
0.18
2KJF
-
CCLA_CARML
A:
[1-60]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
A
Y
G
I
A
Q
G
T
A
E
K
V
V
S
-
L
I
---
N
-------
A
G
-
L
T
V
--
G
S
I
---
I
S
I
------------
L
G
G
V
T
V
---
G
L
---
S
------------
G
V
F
----
T
A
V
K
-----------
A
A
-----
I
A
K
Q
--
G
I
K
K
A
I
Q
55
SP3
59.35
18%
34
- C5 -
0.59
1UW4
-
REN3B_HUMAN
A:
[1-91]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
S
-------
K
V
V
I
R
R
L
P
P
T
L
T
K
E
Q
L
Q
E
H
L
Q
-
P
M
P
--
E
-------
H
D
Y
F
E
F
FS
N
D
T
SLY
P
H
M
------------
Y
A
R
A
Y
I
---
N
F
K
N
-
Q
------------
E
D
I
----
I
L
F
R
-----------
D
R
-----
F
D
G
Y
VF
L
D
N
K
G
Q
E
49
Fugue
55.90
27%
-26
- C6 -
-
1QUB
2
APOH_HUMAN
A:
[121-183]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
I
C
PPPSIPT
F
A
T
L
R
V
Y
K
P
S
A
G
N
N
S
L
Y
----------
R
-------
D
T
-
A
V
F
--
E
C
L
---
P
---------------
Q
H
A
M
F
---
G
N
D
T
I
T
------------
C
T
T
----
H
--------------
G
N
-----
W
T
K
L
--
P
E
C
R
E
--
62
SP3
55.70
24%
63
- C5 -
0.33
1MOL
-
MONB_DIOCU
A:
[1-94]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
E
W
E
-------
I
I
D
I
G
P
F
T
Q
N
L
G
K
F
A
V
D
E
E
N
K
-
I
G
Q
--
Y
-------
G
R
-
L
T
F
--
N
K
V
---
I
R
P
------------
C
M
K
K
T
I
---
Y
E
N
E
-
R
EIKGYEYQLYVY
A
S
D
----
K
L
F
R
-----------
A
D
-----
I
S
E
D
--
Y
K
T
R
G
R
K
63
SP3
54.51
15%
6
- C5 -
0.43
1CVJ
2
PABP1_HUMAN
A:
[11-90]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-------
S
L
Y
V
G
D
L
H
P
D
V
T
E
A
M
L
Y
E
K
F
S
-
P
A
G
--
P
ILSIRVC
R
D
-
M
I
T
--
R
R
----
S
L
G
------------
Y
A
Y
V
N
F
-----
Q
Q
-
P
------------
A
D
A
----
E
R
A
L
-----------
D
T
-----
M
N
F
---
D
V
I
K
G
K
P
54
Fugue
53.62
15%
-18
- C5 -
0.31
2KL8
-
?
A:
[1-85]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
M
-------
D
I
R
F
R
G
D
D
L
E
A
F
E
K
A
L
K
E
M
I
R
-
Q
A
R
KF
A
-------
G
T
-
V
T
Y
--
T
L
D
---
G
N
D
------------
L
E
I
R
I
T
---
G
V
P
E
-
Q
------------
V
R
K
----
E
L
A
K
-----------
E
A
-----
E
R
L
A
--
K
E
F
N
I
T
V
44
Fugue
50.91
20%
3
- C5 -
0.31
1RGE
1
RNSA_KITAU
A:
[1-96]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
S
-------
G
T
V
C
L
S
A
L
P
P
E
A
T
D
T
L
N
L
I
A
S
-
D
G
P
--
F
-------
P
Y
-
S
Q
D
--
G
V
V
---
F
Q
N
RESVLPTQSYGY
Y
H
E
Y
T
V
ITP
G
A
R
T
-
R
------------
G
T
R
----
R
I
I
T
-----------
G
E
ATQED
Y
Y
T
G
--
D
H
Y
A
T
F
S
60
SP3
50.37
10%
-130
- C9 -
-
1D1L
-
RCRO_LAMBD
A:
[1-61]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
E
Q
-------
R
I
T
L
K
D
Y
A
M
R
F
G
Q
T
K
T
A
K
D
L
G
-
V
Y
Q
--
S
-------
A
----
I
--
N
K
A
---
I
H
A
------------
G
R
K
I
F
L
---
T
I
N
A
-
D
-------------------
G
S
V
Y
-----------
A
E
-----
E
V
K
P
--
W
P
S
N
---
64
SP3
49.49
11%
14
- C5 -
0.38
1FXL
-
ELAV4_HUMAN
A:
[1-82]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
K
T
-------
N
L
I
V
N
Y
L
P
Q
N
M
T
Q
E
E
F
R
S
L
F
G
-
S
I
G
--
E
IESCKLV
R
D
-
K
I
T
--
G
Q
----
S
L
G
------------
Y
G
F
V
N
Y
-----
I
D
-
P
------------
K
D
A
----
E
K
A
I
-----------
N
T
-----
L
N
G
---
L
R
L
Q
T
K
T
43
Fugue
49.29
20%
2
- C5 -
0.27
1I8V
-
RNSA_KITAU
A:
[1-96]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
V
S
-------
G
T
V
C
L
S
A
L
P
P
E
A
T
D
T
L
N
L
I
A
S
-
D
G
P
--
F
-------
P
Y
-
S
Q
D
--
G
V
V
---
F
Q
N
RESVLPTQSYGY
Y
H
E
Y
T
V
ITP
G
A
R
T
-
R
------------
G
T
R
----
R
I
I
T
-----------
G
E
ATQED
F
Y
T
G
--
D
H
Y
A
T
F
S
48
Fugue
48.01
29%
72
* C9 *
-
5F7C
-
?
A:
[12-723]
-----------------------------------------------------------------------------------LFDFDTELLRDESLWKACKPTAVYEKDGDICVTVPFQKQLLANDMVADTAVPREEYTLIIRQYNIGITRLFLGFGEYEILFTQDGT
K
R
A
-------
V
I
N
V
E
--
E
P
A
L
D
R
W
S
-----
E
-
L
L
P
--
D
---------------------
P
Q
E
------------
T
L
D
I
T
L
---
Y
P
D
G
-
K
------------
R
E
I
----
R
L
A
A
-----------
Y
D
-----
H
F
S
P
--
P
R
Y
D
G
L
P
58
SP3
48.00
15%
65
- C5 -
0.28
1SCJ
-
?
B:
[1-71]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------E
K
K
Y
-------
I
V
G
F
K
Q
T
M
S
A
M
S
S
A
K
K
K
D
V
I
S
Q
K
G
G
--
K
-------
V
E
-
K
Q
F
--
K
Y
V
---
N
A
A
------------
A
A
T
L
D
E
---
K
A
V
K
-
E
------------
L
K
K
DPSV
A
Y
V
E
-----------
E
D
-----
H
I
A
---
H
E
Y
----
41
Fugue
45.26
28%
-
- C5 -
0.16
4F6L
-
?
A:
[2013-2390]
VALPDNLSELQKIVMSRYNLGILEDSLSHRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQHHARLIYVSTISVGTYFDI
D
T
E
-------
D
V
T
F
S
E
A
D
V
Y
K
G
Q
------
L
L
-
T
S
P
--
Y
-------
T
R
-
S
K
F
--
Y
S
E
---
L
K
V
------------
L
E
A
V
N
N
---
G
L
D
-----------------
G
----
R
I
V
R
V----------
G
N
-----
L
T
S
P
--
Y
N
G
R
W
H
M
46
Fugue
44.65
17%
-
- C- -
-
3OC5
-
TCPF_VIBCH
A:
[25-318]
--------------------------------------------------------------EHLRYPYLECIKIGMSRDYLENCVKVSFPTSQDMFYDAYPSTKTRTKEDFSARLLAGDYDSLQKLYIDFYLAQTTFDWEIPTRDQIETLVNYANEGKLSTALNQEYI
T
G
R
-------
F
L
T
K
E
N
G
--------
R
Y
D
I
V
N
-
V
G
G
--
V
-------
P
D
-
N
T
P
--
V
K
L
---
P
A
I
------------
V
S
K
R
G
L
---
M
G
T
T
-
S
------------
V
V
N
----
A
I
P
N
-----------
E
I
-----
Y
P
H
I
--
K
V
Y
E
G
T
L
10
PsiBlast_PDB
44.51
31%
-12
- C5 -
4MS3
-
GABR2_HUMAN
B:
[66-110]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
C
D
N
A
K
G
L
K
A
F
Y
D
A
I
K
-
Y
G
P
--
N
-------
H
L
-
M
V
F
--
G
G
V
---
C
P
S
------------
V
T
S
I
-----------------------------------------------------------------
4
PsiBlast_PDB
44.03
31%
-18
- C5 -
4MQF
-
GABR2_HUMAN
B:
[66-112]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
C
D
N
A
K
G
L
K
A
F
Y
D
A
I
K
-
Y
G
P
--
N
-------
H
L
-
M
V
F
--
G
G
V
---
C
P
S
------------
V
T
S
I
-----------------------------------------------------------------
11
PsiBlast_PDB
43.77
31%
-4
- C5 -
4MS4
-
GABR2_HUMAN
B:
[66-110]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
C
D
N
A
K
G
L
K
A
F
Y
D
A
I
K
-
Y
G
P
--
N
-------
H
L
-
M
V
F
--
G
G
V
---
C
P
S
------------
V
T
S
I
-----------------------------------------------------------------
7
PsiBlast_PDB
43.52
31%
-11
- C5 -
4MR9
-
GABR2_HUMAN
B:
[66-112]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
C
D
N
A
K
G
L
K
A
F
Y
D
A
I
K
-
Y
G
P
--
N
-------
H
L
-
M
V
F
--
G
G
V
---
C
P
S
------------
V
T
S
I
-----------------------------------------------------------------
6
PsiBlast_PDB
43.00
31%
-4
- C5 -
4MR8
-
GABR2_HUMAN
B:
[66-112]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
C
D
N
A
K
G
L
K
A
F
Y
D
A
I
K
-
Y
G
P
--
N
-------
H
L
-
M
V
F
--
G
G
V
---
C
P
S
------------
V
T
S
I
-----------------------------------------------------------------