@TOME V3
(Feb 2022)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : CH1881_115510T0_kcl59: (2019-03-29 )
DDYDCTVIFRNNHAPQRQPIVVHTYYSRDLPIELDGVRHTIQLSGCTPEQSQIPQGYSVEHMT
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..-....---...10........20.--......----------.-------30.........40...--..-.---...50-----.........-60...
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DD-Y
D
C
T
---
V
I
F
RNNHAPQRQ
P
I
V
V
--
H
T
YYSR----------D-------L-
P
I
E
LDG
V
R
H
T
-
I
Q
L--SG-C---TP
E
Q
------SQIPQGYSV-E-HMT
24
SP3
68.86
20%
-85
- C14 -
0.33
1KV3
-
TGM2_HUMAN
A:
[586-687]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
-
P
E
I
K
---
I
R
I
L
G
E
-
P
K
Q
K
R
K
L
V
A
--
E
V
S
L
Q
N
----------
P
-------
L
-
P
V
A
L
E
G
C
T
F
T
-
V
E
G
--
A
G
-
L
---
T
E
E
Q
------
K
T
V
E
I
P
D
P
V
-
E
-
A
G
E
27
SP3
66.57
19%
49
- C14 -
0.33
1L9N
1
TGM3_HUMAN
A:
[1-692]
AALGVQSINWQTAFNRQAHHTDKFSSQELILRRGQNFQVLMIMNKGLGSNERLEFIVSTGPYPSESAMTKAVFPLSNGSSGGWSAVLQASNGNTLTISISSPASAPIGRYTMALQIFSQGGISSVKLGTFILLFNPWLNVDSVFMGNHAEREEYVQEDAGIIFVGSTNRIGMIGWNFGQFEEDILSICLSILDRSLNFRRDAATDVASRNDPKYVGRVLSAMINSNDDNGVLAGNWSGTYTGGRDPRSWDGSVEILKNWKKSGLSPVRYGQCWVFAGTLNTALRSLGIPSRVITNFNSAHDTDRNLSVDVYYDPMGNPLDKGSDSVWNFHVWNEGWFVRSDLGPSYGGWQVLDATPQERSQGVFQCGPASVIGVREGDVQLNFDMPFIFAEVNADRITWLYDNTTGKQWKNSVNSHTIGRYISTKAVGSNARMDVTDKYKYPEGSDQERQVFQKALGKLKPSIIGKLKVAGMLAVGKEVNLVLLLKNLSRDTKTVTVNMTAWTIIYNGTLVHEVWKDSATMSLDPEEEAEHPIKISYAQYERYLKSDNMIRITAVCKVPDESEVVVERDIIL
D
N
-
P
T
L
T
---
L
E
V
L
N
E
-
A
R
V
R
K
P
V
N
V
--
Q
M
L
F
S
N
----------
P
-------
L
-
D
E
P
V
R
D
C
V
L
M
-
V
E
G
--
S
G
-
L
---
L
L
G
N
------
L
K
I
D
V
P
-
T
L
-
G
-
P
K
E
28
SP3
66.25
17%
-117
- C14 -
0.40
1L9N
-
TGM3_HUMAN
A:
[594-692]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
T
L
T
---
L
E
V
L
N
E
-
A
R
V
R
K
P
V
N
V
--
Q
M
L
F
S
N
----------
P
-------
L
-
D
E
P
V
R
D
C
V
L
M
-
V
E
G
--
S
G
-
L
---
L
L
G
N
------
L
K
I
D
V
P
-
T
L
-
G
-
P
K
E
32
SP3
65.18
22%
47
- C14 -
0.58
1KV3
1
TGM2_HUMAN
A:
[15-687]
------------------------ETNGRDHHTADLCREKLVVRRGQPFWLTLSLTFSVVTGPAPSQEAGTKARFPLRDAVEEGDWTATVVDQQDCTLSLQLTTPANAPIGLYRLSLEASGHFILLFNAWCPADAVYLDSEEERQEYVLTQQGFIYQGSAKFIKNIPWNFGQFQDGILDICLILLDVNPKFLKNAGRDCSRRSSPVYVGRVGSGMVNCNDDQGVLLGRWDNNYGDGVSPMSWIGSVDILRRWKNHGCQRVKYGQCWVFAAVACTVLRCLGIPTRVVTNYNSAHDQNSNLLIEYFRNEFGEIQGDKSEMIWNFHCWVESWMTRPDLQPGYEGWQALDPTPQEKSEGTYCCGPVPVRAIKEGDLSTKYDAPFVFAEVNADVVDWIQQDDGSVHKSINRSLIVGLKISTKSVGRDEREDITHTYKYPEGSSEEREAFTRANHLNKLAEKEETGMAMRIRVGQSMNMGSDFDVFAHITNNTAEEYVCRLLLCARTVSYNGILGPECGTKYLLNLTLEPFSEKSVPLCILYEKYRDCLTESNLIKVRALLVEPVINSYLLAERDLYL
E
N
-
P
E
I
K
---
I
R
I
L
G
E
-
P
K
Q
K
R
K
L
V
A
--
E
V
S
L
Q
N
----------
P
-------
L
-
P
V
A
L
E
G
C
T
F
T
-
V
E
G
--
A
G
-
L
---
T
E
E
Q
KTVEIP
D
P
V
E
A
G
E
E
V
-
K
V
R
M
D
39
Fugue
57.49
27%
-
- C11 -
-
4U3Q
-
TA17_TREPA
A:
[10-130]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KAKAEKVECALKGGIFRGT
L
P
-
I
D
T
T
---
V
T
F
N
A
D
G
T
A
Q
K
V
E
L
S
P
--
L
T
Y
R
G
T
----------
W
-------
M
-
V
R
E
-
D
G
I
----
V
E
L
--
S
L
-
V
---
E
K
E
L
------
Y
E
L
I
D
S
N
S
V
-
R
-
Y
M
G
2
PsiBlast_PDB
57.23
28%
-137
- C14 -
0.29
6A8P
-
TGM2_HUMAN
A:
[599-636]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
K
R
K
L
V
A
--
E
V
S
L
Q
N
----------
P
-------
L
-
P
V
A
L
E
G
C
T
F
T
-
V
E
G
--
A
G
-
L
---
T
E
E
Q
------
K
T
V
------------
47
Fugue
54.65
12%
24
- C11 -
-
2MYW
-
?
A:
[7-85]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SGRENLYFQGHM
A
A
-
P
A
R
F
---
C
V
Y
Y
D
G
H
L
P
A
T
R
V
L
L
M
--
Y
V
R
I
G
T
----------
T
-------
A
-
T
I
T
A
R
G
H
E
F
E
-
V
E
A
KD
Q
N
-
C
KVI
L
T
N
G
------
K
Q
A
P
D
W
L
A
A
-
E
-
P
Y
-
5
PsiBlast_PDB
54.47
28%
-138
- C14 -
0.24
3LY6
-
TGM2_HUMAN
A:
[599-636]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
K
R
K
L
V
A
--
E
V
S
L
Q
N
----------
P
-------
L
-
P
V
A
L
E
G
C
T
F
T
-
V
E
G
--
A
G
-
L
---
T
E
E
Q
------
K
T
V
------------
1
PsiBlast_PDB
53.75
28%
-135
- C14 -
0.24
4PYG
-
TGM2_HUMAN
A:
[599-636]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
K
R
K
L
V
A
--
E
V
S
L
Q
N
----------
P
-------
L
-
P
V
A
L
E
G
C
T
F
T
-
V
E
G
--
A
G
-
L
---
T
E
E
Q
------
K
T
V
------------
4
PsiBlast_PDB
53.39
28%
-154
- C14 -
0.26
3S3S
-
TGM2_HUMAN
A:
[606-643]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
K
R
K
L
V
A
--
E
V
S
L
Q
N
----------
P
-------
L
-
P
V
A
L
E
G
C
T
F
T
-
V
E
G
--
A
G
-
L
---
T
E
E
Q
------
K
T
V
------------
3
PsiBlast_PDB
52.84
28%
-149
- C14 -
0.25
3S3J
-
TGM2_HUMAN
A:
[606-643]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
K
R
K
L
V
A
--
E
V
S
L
Q
N
----------
P
-------
L
-
P
V
A
L
E
G
C
T
F
T
-
V
E
G
--
A
G
-
L
---
T
E
E
Q
------
K
T
V
------------
6
PsiBlast_PDB
52.40
28%
-129
- C14 -
0.21
1KV3
-
TGM2_HUMAN
A:
[599-636]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
K
R
K
L
V
A
--
E
V
S
L
Q
N
----------
P
-------
L
-
P
V
A
L
E
G
C
T
F
T
-
V
E
G
--
A
G
-
L
---
T
E
E
Q
------
K
T
V
------------
7
PsiBlast_PDB
52.21
28%
-140
- C14 -
0.18
2Q3Z
-
TGM2_HUMAN
A:
[599-636]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
K
R
K
L
V
A
--
E
V
S
L
Q
N
----------
P
-------
L
-
P
V
A
L
E
G
C
T
F
T
-
V
E
G
--
A
G
-
L
---
T
E
E
Q
------
K
T
V
------------
46
Fugue
50.34
19%
9
- C11 -
-
2BOS
-
?
A:
[1-68]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
C
A
KGK
I
E
F
S
K
Y
N
E
D
N
T
F
T
V
K
V
SG
R
E
Y
W
T
N
----------
R
WNLQPLL
Q
-
S
A
Q
L
T
G
M
T
V
T
-
I
I
S
--
N
T
-
C
---
S
S
G
-----------
S
G
F
A
E
-
V
-
Q
F
N
13
HHSearch
49.55
24%
-31
- C7 -
-
5VAE
-
ASP3_STRGN
F:
[39-96]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
D
Q
---
V
Y
F
E
N
-
L
I
A
S
G
Q
--
T
I
--
H
E
W
S
S
S
WNYQGDRQVP
S
-------
L
-
P
L
L
K
R
G
R
S
Y
S
-
L
T
R
--
D
-T
S
---
Y
P
S
E
------
S
--------------
45
Fugue
48.75
13%
-82
- C11 -
-
2MM2
-
?
A:
[1-65]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
C
T
---
A
N
I
L
N
I
N
E
V
V
I
A
T
G
C
V
--
P
A
G
G
N
L
----------
I
-------
I
-
R
V
G
S
D
H
S
Y
L
I
-
R
A
T
--
V
S
-
C
GLS
L
N
P
S
------
Q
S
F
I
N
G
E
S
L
-
A
-
S
G
G
30
SP3
48.36
23%
65
- C11 -
-
1AVA
-
AMY2_HORVU
A:
[1-403]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QVLFQGFNWESWKHNGGWYNFLMGKVDDIAAAGITHVWLPPASQSVAEQGYMPGRLYDLDASKYGNKAQLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIYCIFEGGTPDARLDWGPHMICRDDRPYADGTGNPDTGADFGAAPDIDHLNLRVQKELVEWLNWLKADIGFDGWRFDFAKGYSADVAKIYIDRSEPSFAVAEIWTSLAYGGDGKPNLNQDQHRQELVNWVDKVGGKGPATTFDFTTKGILNVAVEGELWRLRGTDGKAPGMIGWWPAKAVTFVDNHDTGSTQHMWPFPSDRVMQGYAYILTHPGTPCIFYDHFFDWGLK
E
E
-
I
D
R
L
---
V
S
V
R
T
R
H
G
I
H
N
E
S
K
L
Q
--
I
I
E
A
D
A
----------
D
-------
L
Y
L
A
E
I
D
G
-
K
V
I
-
V
K
L
--
G
P
-
R
---
Y
D
V
G
------
N
L
I
P
G
G
F
K
V
A
A
-
H
G
N
35
Fugue
48.02
11%
-94
- C14 -
0.37
1F13
-
F13A_HUMAN
A:
[628-728]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
I
-
P
E
I
I
---
I
K
V
R
G
T
-
Q
V
V
G
S
D
M
T
V
--
T
V
E
F
T
N
----------
P
-------
L
-
K
E
T
L
R
N
V
W
V
H
-
L
D
G
--
P
G
-
V
---
T
R
P
M
------
K
K
M
F
R
E
I
R
P
-
N
-
S
T
V
41
Fugue
44.31
20%
-7
* C13 *
-
4HVK
11
ISCS2_ARCFU
A:
[2-378]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AYFDYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLRDDTILVSVQHANNEIGTIQPVEEISEVLAGKAALHIDATASVGQIEVDVEKIGADMLTISSNDIYGPKGVGALWIRKEAKLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEWREEAERLRRLRDRIID
N
V
-
L
K
I
E
---
E
S
Y
L
N
G
H
P
E
K
R
L
P
N
N
V
--
N
V
R
F
S
Y
---------------------
I
E
G
E
S
I
V
L
S
-
L
D
M
--
A
G
-
I
QAS
T
G
Q
P
------
S
H
V
L
M
A
C
G
L
-
K
-
H
E
E
42
Fugue
43.23
20%
-
- C- -
-
4QPV
-
?
A:
[39-312]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SVPEEMEASKYVGQGFQPPAEKDAIEFSKKHKDKIAKRGEQFFMDNFGLKVKATNVVGSGDGVEVFVHCDDHDIVFNASIPFDKSIIESDSSLRSEDKGDDMSTLVGTVLSGFEYRAHKEELDNLTEVLKEYKSKYKYTGYTENAIMKTQNSGFRNEYYYLTAIPYTLDEYKRYFQPLIKEDDKSFR
D
G
M
R
N
S
K
---
K
Q
L
K
D
----
K
S
R
P
Y
V
V
--
T
T
L
F
S
T
----------
K
-------
D
-
N
F
T
K
D
N
T
I
D
E
M
I
D
F
--
S
E
-
V
---
L
K
K
K
------
K
N
I
P
H
D
L
N
V
-
S
-
L
Q
I