@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VRG1: (2017-12-02 )
MNNKQRWMGGVVLLGGGVLLAALLLKGNEEIKQVDVQPQTSTSPKLQAKPKQSAQEGQMVQLQPLAVDVETEKRLLEEQRRSREKAVAEQEARAAEFLAMQQQAEADAARKAAAEYAAINARRAAAQESSDNIPPEVAGSENKAKGQQTDTKKSVDLAKADADKKAAEAKRLAEADKKAAEAKRQAEADKKAAEAKRQAEADKKAAEAKRQAEADKKAAEAKRKAEAEKKAEAEKARELLENGDKKWMVQVALAANQANADAVVSKLRAKGYKVTTSPTSKGIRIMVGPAKDRDTADTTRKKITSDASLNMKSAWVIDWVPLDQRKSD
Atome Classification :
(20 SA)
.........10........20........30...------.....40........50........60......----..70---------.---------.......80........90....-....100.....--..110.....--..120........------130.......140.---......150.......160.------......170.......180..-----.-...-----..190......-.200.........210.......220.......230......-.240.......250.......260.......270.......280.......290.......300...----....310.......320......
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
MN
N
K
Q
RWMG
G
V
V
L
LG
G
G
V
L
L
A
A
L
L
LKGNE
E
I
K
Q
V------DVQPQTSTSPKLQAKPKQSAQEG
Q
M
V
Q
L
Q
P
L
A
V
----
D
V
E
T
---------
E
---------
K
R
L
L
E
E
Q
R
R
S
R
E
K
A
V
A
E
Q
E
A
R
A
A
-
E
F
L
A
M
Q
Q
Q
A
E
A
D
--
A
A
R
K
A
A
A
E
Y
A
--AI
N
-
A
R
R
AAAQES------SDNIPPEVAGSENK---AKGQQTDTKKSVDLAKADA
D
------
K
K
A
A
E
A
K
R
L
A
E
A
D
K
K
A
A
E
-
A
K
-----
R
-
Q
A
E
-----
A
D
K
K
A
A
E
A
K
R
Q
-
A
E
--
A
D
K
K
A
A
E
A
K
R
Q
A
E
A
D
K
K
A
A
E
A
K
R
K
A
E
A
E
K
K
A
E
A
E
K
A
R
E
-
L
L
ENGD
K
K
W
M
V
Q
V
A
L
AANQA
N
A
D
A
V
V
S
K
L
R
AKG
Y
K
V
TTSPTSK
G
I
R
I
M
VGPAKDRDTA
D
T
T
R
K
KITS----DASLNM
K
S
A
W
V
I
D
W
VPLDQRKSD
8
PsiBlast_PDB
65.30
29%
-
- C2 -
-
4JNF
-
DNAK_ECOLI
A:
[480-597]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
G
I
L
H
V
S
A
K
D
K
N
S
---
G
K
E
Q
K
I
T
I
K
A
S
S
G
L
N
E
D
E
I
Q
------
K
M
V
R
D
A
E
A
N
A
E
A
D
R
K
F
E
E
L
V
Q
-----
T
-
R
N
Q
-----
G
D
H
L
L
H
S
T
R
K
Q
-
V
E
E
A
G
D
K
L
P
A
D
D
K
T
A
I
E
S
A
L
T
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
-
K
M
Q
E
-
L
A
Q
V
S
Q
K
---------------------------------------------------------------------------------------
4
PsiBlast_PDB
64.96
25%
147
- C2 -
-
2KHO
-
DNAK_ECOLI
A:
[391-597]
----------------------------------------------------------------
L
L
D
V
T
P
L
S
L
----
G
I
E
T
MGG
V
M
T
T
LI
A
---------
K
N
T
T
I
P
T
K
H
S
Q
V
F
S
T
A
E
D
N
Q
S
A
V
-
T
I
H
V
L
Q
G
E
R
K
R
A
--
A
D
N
K
S
L
G
Q
F
N
L
D
G
I
N
P
A
P
R
G
M
P
Q
I
E
V
T
F
D
I
D
A
D
G
I
L
H
V
S
A
K
D
K
N
S
---
G
K
E
Q
K
I
T
I
K
A
S
S
G
L
N
E
D
E
I
Q
------
K
M
V
R
D
A
E
A
N
A
E
A
D
R
K
F
D
E
L
V
Q
-----
T
-
R
N
Q
-----
G
D
H
L
L
H
S
T
R
K
Q
-
V
E
E
A
G
D
K
L
P
A
D
D
K
T
A
I
E
S
A
L
T
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
-
K
M
Q
E
-
L
A
Q
V
S
Q
K
---------------------------------------------------------------------------------------
12
PsiBlast_PDB
62.87
25%
142
- C2 -
-
3FPP
-
MACA_ECOLI
A:
[43-233]
--------------------------------
P
G
------
D
L
Q
Q
S
V
L
A
T
G
K
L
D
A
L
R
K
V
D
V
G
A
Q
V
S
G
Q
L
K
T
L
S
V
AIG
D
K
V
K
K
---------
D
---------
Q
L
L
G
V
I
D
P
E
Q
A
E
N
Q
I
K
E
V
E
A
T
L
M
-
E
L
R
A
Q
R
Q
Q
A
E
A
E
L
K
L
A
R
V
T
Y
S
R
Q
Q
--
R
L
A
-
Q
T
Q
A
V
S
Q
Q
D
------
L
D
N
A
A
T
E
M
A
V
K
Q
A
Q
I
G
T
I
D
A
Q
I
K
R
N
Q
A
S
L
D
T
A
K
T
N
L
D
Y
T
RIVA
P
M
A
G
E
V
T
Q
I
T
T
L
Q
G
Q
T
V
I
-
A
A
-----
Q
-
Q
A
P
N
I
L
T
L
A
D
M
S
A
M
L
V
K
A
Q
V
S
E
--
A
D
-----------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
62.19
23%
126
- C2 -
-
5EW5
-
CEA9_ECOLX
A:
[276-496]
-------------------------------------------------------
P
K
D
S
G
H
N
A
V
Y
V
S
V
S
D
V
L
S
----
P
D
Q
V
---------
K
---------
Q
R
Q
D
E
E
N
R
R
Q
Q
E
W
D
-
A
T
H
P
V
E
A
A
-
E
R
N
C
E
R
A
R
A
E
L
N
--
Q
A
N
E
D
V
A
R
N
-----
Q
-
E
R
Q
A
K
A
V
Q
V
------
Y
N
S
R
K
S
E
L
D
A
A
N
K
T
---
L
A
D
A
I
A
E
I
K
Q
F
N
R
F
A
H
---
D
------
P
M
A
G
G
H
R
M
W
Q
M
A
G
L
K
A
Q
R
-
A
Q
T
D
V
N
N
K
-
Q
A
A
-----
F
D
A
A
A
K
E
K
S
D
A
-
D
A
--
A
L
S
A
A
Q
E
R
R
K
Q
K
E
N
K
E
K
D
A
K
D
K
C
A
M
E
S
K
R
N
K
P
G
K
A
T
G
K
-
G
K
P
V
G
D
K
-
W
L
D
D
A
G
K
D
S
G
A
P
I
P
D
R
I
A
D
K
L
R
D
K
E
F
K
-----------------------------------------------------------
2
PsiBlast_PDB
60.84
25%
151
- C2 -
-
4B9Q
-
DNAK_ECOLI
A:
[391-597]
----------------------------------------------------------------
L
L
D
V
T
P
L
S
L
----
G
I
E
T
---------
M
GG
V
M
T
T
LIA
K
N
T
T
I
P
T
K
H
S
Q
V
F
S
T
A
E
D
N
Q
S
A
V
-
T
I
H
V
L
Q
G
E
R
K
R
A
--
A
D
N
K
S
L
G
Q
F
N
LD
G
I
N
P
A
P
R
G
M
P
Q
I
E
V
T
F
D
I
D
A
D
G
I
L
H
V
S
A
K
D
K
N
S
---
G
K
E
Q
K
I
T
I
K
A
S
S
G
L
N
E
D
E
I
Q
------
K
M
V
R
D
A
E
A
N
A
E
A
D
R
K
C
E
E
L
V
Q
-----
T
-
R
N
Q
-----
G
D
H
L
L
H
S
T
R
K
Q
-
V
E
E
A
G
D
K
L
P
A
D
D
K
T
A
I
E
S
A
L
T
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
-
K
M
Q
E
-
L
A
Q
V
S
Q
K
---------------------------------------------------------------------------------------
10
PsiBlast_PDB
60.75
24%
153
- C2 -
-
5NIL
-
?
D:
[32-233]
---------------------------
P
V
P
T
Y
Q
T
LIVRPG
D
L
Q
Q
S
V
L
A
T
G
K
L
D
A
L
R
K
V
D
V
G
A
Q
V
S
G
Q
L
K
T
L
S
V
AIGD
K
V
K
K
---------
D
---------
Q
L
L
G
V
I
D
P
E
Q
A
E
N
Q
I
K
E
V
E
A
T
L
M
-
E
L
R
A
Q
R
Q
Q
A
E
A
E
LK
L
A
R
V
T
Y
S
R
Q
Q
--
R
L
A
-
Q
T
Q
A
V
S
Q
Q
D
------
L
D
N
A
A
T
E
M
A
V
K
Q
A
Q
IGT
I
D
A
Q
I
K
R
N
Q
A
S
L
D
T
A
K
T
N
L
D
YTRIVA
P
M
A
G
E
V
T
Q
I
T
T
L
Q
G
Q
T
V
I
-
A
A
-----
Q
-
Q
A
P
NILTL
A
D
M
S
A
M
L
V
K
A
Q
V
S
E
--
A
D
-----------------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
60.75
24%
153
- C2 -
-
5NIK
-
?
D:
[32-233]
---------------------------
P
V
P
T
Y
Q
T
LIVRPG
D
L
Q
Q
S
V
L
A
T
G
K
L
D
A
L
R
K
V
D
V
G
A
Q
V
S
G
Q
L
K
T
L
S
V
AIGD
K
V
K
K
---------
D
---------
Q
L
L
G
V
I
D
P
E
Q
A
E
N
Q
I
K
E
V
E
A
T
L
M
-
E
L
R
A
Q
R
Q
Q
A
E
A
E
LK
L
A
R
V
T
Y
S
R
Q
Q
--
R
L
A
-
Q
T
Q
A
V
S
Q
Q
D
------
L
D
N
A
A
T
E
M
A
V
K
Q
A
Q
IGT
I
D
A
Q
I
K
R
N
Q
A
S
L
D
T
A
K
T
N
L
D
YTRIVA
P
M
A
G
E
V
T
Q
I
T
T
L
Q
G
Q
T
V
I
-
A
A
-----
Q
-
Q
A
P
NILTL
A
D
M
S
A
M
L
V
K
A
Q
V
S
E
--
A
D
-----------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
58.79
29%
-
- C- -
-
4F01
-
DNAK_ECOLI
A:
[480-597]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
G
I
L
H
V
S
A
K
D
K
N
S
---
G
K
E
Q
K
I
T
I
K
A
S
S
G
L
N
E
D
E
I
Q
------
K
M
V
R
D
A
E
A
N
A
E
A
D
R
K
F
E
E
L
V
Q
-----
T
-
R
N
Q
-----
G
D
H
L
L
H
S
T
R
K
Q
-
V
E
E
A
G
D
K
L
P
A
D
D
K
T
A
I
E
S
A
L
T
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
-
K
M
Q
E
-
L
A
Q
V
S
Q
K
---------------------------------------------------------------------------------------
13
PsiBlast_PDB
58.36
29%
154
- C2 -
-
4R5G
-
DNAK_ECOLI
A:
[103-220]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
G
I
L
H
V
S
A
K
D
K
N
S
---
G
K
E
Q
K
I
T
I
K
A
S
S
G
L
N
E
D
E
I
Q
------
K
M
V
R
D
A
E
A
N
A
E
A
D
R
K
F
E
E
L
V
Q
-----
T
-
R
N
Q
-----
G
D
H
L
L
H
S
T
R
K
Q
-
V
E
EA
G
D
K
L
P
A
D
D
K
T
A
I
E
S
A
L
T
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
-
K
M
Q
E
-
L
A
Q
V
S
Q
K
---------------------------------------------------------------------------------------
5
PsiBlast_PDB
57.52
29%
159
- C2 -
-
4JN4
-
DNAK_ECOLI
A:
[476-593]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
G
I
L
H
V
S
A
K
D
K
N
S
---
G
K
E
Q
K
I
T
I
K
A
S
S
G
L
N
E
D
E
I
Q
------
K
M
V
R
D
A
E
A
N
A
E
A
D
R
K
F
E
E
L
V
Q
-----
T
-
R
N
Q
-----
G
D
H
L
L
H
S
T
R
K
Q
-
V
E
E
A
G
D
K
L
P
A
D
D
K
T
A
I
E
S
A
L
T
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
-
K
M
Q
E
-
L
A
Q
V
S
Q
K
---------------------------------------------------------------------------------------
14
PsiBlast_PDB
57.08
29%
174
- C2 -
-
4R5I
-
A:
[103-220]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
G
I
L
H
V
S
A
K
D
K
N
S
---
G
K
E
Q
K
I
T
I
K
A
S
S
G
L
N
E
D
E
I
Q
------
K
M
V
R
D
A
E
A
N
A
E
A
D
R
K
F
E
E
L
V
Q
-----
T
-
R
N
Q
-----
G
D
H
L
L
H
S
T
R
K
Q
-
V
E
E
A
G
D
K
L
P
A
D
D
K
T
A
I
E
S
A
L
T
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
-
K
M
Q
E
-
L
A
Q
V
S
Q
K
---------------------------------------------------------------------------------------
20
PsiBlast_PDB
56.17
29%
164
- C2 -
-
3DPO
-
DNAK_ECOLI
A:
[92-209]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
G
I
L
H
V
S
A
K
D
K
N
S
---
G
K
E
Q
K
I
T
I
K
A
S
S
G
L
N
E
D
E
I
Q
------
K
M
V
R
D
A
E
A
N
A
E
A
D
R
K
F
E
E
L
V
Q
-----
T
-
R
N
Q
-----
G
D
H
L
L
H
S
T
R
K
Q
-
V
E
E
A
G
D
K
L
P
A
D
D
K
T
A
I
E
S
A
L
T
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
-
K
M
Q
E
-
L
A
Q
V
S
Q
K
---------------------------------------------------------------------------------------
6
PsiBlast_PDB
56.07
29%
157
- C2 -
-
4JNE
-
DNAK_ECOLI
A:
[476-593]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
G
I
L
H
V
S
A
K
D
K
N
S
---
G
K
E
Q
K
I
T
I
K
A
S
S
G
L
N
E
D
E
I
Q
------
K
M
V
R
D
A
E
A
N
A
E
A
D
R
K
F
E
E
L
V
Q
-----
T
-
R
N
Q
-----
G
D
H
L
L
H
S
T
R
K
Q
-
V
E
E
A
G
D
K
L
P
A
D
D
K
T
A
I
E
S
A
L
T
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
-
K
M
Q
E
-
L
A
Q
V
S
Q
K
---------------------------------------------------------------------------------------
15
PsiBlast_PDB
55.89
29%
160
- C2 -
-
4R5L
-
DNAK_ECOLI
A:
[103-220]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
G
I
L
H
V
S
A
K
D
K
N
S
---
G
K
E
Q
K
I
T
I
K
A
---
L
N
E
D
E
I
Q
------
K
M
V
R
D
A
E
A
N
A
E
A
D
R
K
F
E
E
L
V
Q
-----
T
-
R
N
Q
-----
G
D
H
L
L
H
S
T
R
K
Q
-
V
E
E
A
G
D
K
L
P
A
D
D
K
T
A
I
E
S
A
L
T
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
-
K
M
Q
E
-
L
A
Q
V
S
Q
K
---------------------------------------------------------------------------------------
16
PsiBlast_PDB
55.60
30%
94
- C2 -
-
4HL8
-
MVP_RAT
A:
[660-801]
----------------------------------------------------------------------
L
A
I
----
E
I
T
T
---------
N
---------
S
---
Q
E
A
A
A
K
H
E
A
Q
R
L
E
Q
E
A
R
G
R
L
E
R
Q
K
I
L
D
Q
S
E
A
E
--
K
A
R
K
E
L
L
E
L
E
--
A
M
-----
S
M
A
V
E
S
------
T
G
N
---
A
K
A
E
A
E
S
R
---
A
E
A
A
R
I
E
G
E
G
S
V
L
Q
A
K
L
K
A
Q
------
A
L
A
I
E
T
E
A
E
L
E
R
V
K
K
V
R
E
-
M
E
-----
L
I
Y
A
R
-----
A
Q
L
E
L
E
V
S
K
A
Q
-
Q
L
--
A
N
V
E
A
K
K
F
K
E
M
T
E
A
-----------------------------------------------------------------------------------------------------------------------
21
HHSearch
50.45
20%
-91
- C2 -
-
1X60
-
A:
[4-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
S
S
G
L
Y
K
V
Q
I
G
A
F
K
V
K
A
N
A
D
S
L
A
S
N
A
E
A
K
G
F
D
S
I
V
L
L
K
D
G
L
Y
K
V
Q
I
G
A
F
S
S
K
D
N
A
D
T
L
A
A
R
A
K
N
-------
A
G
F
D
A
I
V
I
L
-----------
34
Fugue
50.32
20%
-62
- C2 -
-
1UTA
-
FTSN_ECOLI
A:
[243-319]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
E
R
R
W
M
V
Q
C
G
S
F
R
G
A
E
Q
A
E
T
V
R
A
Q
L
A
F
E
G
F
D
S
K
I
T
T
N
N
G
W
N
R
V
V
I
G
P
V
K
G
K
E
N
A
D
S
T
L
N
R
L
K
M
A
GH
T
N
C
I
R
L
A
A
G
G
--------------
38
Fugue
50.09
26%
91
- C2 -
-
3K5B
-
?
B:
[21-120]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
L
I
K
S
L
A
E
------
K
E
K
Q
L
L
E
R
L
E
A
A
K
K
E
A
E
E
-
R
V
-----
K
-
R
A
E
-----
A
E
A
K
A
L
L
E
E
A
E
-
A
K
--
A
K
A
L
E
A
Q
Y
R
E
R
E
R
A
E
T
E
A
L
L
A
R
Y
R
E
R
A
E
A
E
A
K
A
V
R
E
K
A
M
A
R
L
D
E
A
V
A
L
V
L
K
E
V
L
P
------------------------------------------------------------------------------
24
HHSearch
49.75
14%
-128
- C2 -
-
2LEP
-
GLPG_ECOLI
A:
[1-57]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
L
M
I
T
S
F
A
N
P
R
V
A
Q
A
F
V
D
Y
M
A
T
Q
G
V
I
L
T
I
Q
Q
H
-
N
Q
S
D
V
W
L
A
D
E
S
Q
A
E
R
V
R
A
E
L
A
R
F
L
E
---------------------------
17
PsiBlast_PDB
49.61
29%
181
- C2 -
-
4R5J
-
DNAK_ECOLI
A:
[101-218]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
G
I
L
H
V
S
A
K
D
K
N
S
---
G
K
E
Q
K
I
T
I
K
A
----
N
E
D
E
I
Q
------
K
M
V
R
D
A
E
A
N
A
E
A
D
R
K
F
E
E
L
V
Q
-----
T
-
R
N
Q
-----
G
D
H
L
L
H
S
T
R
K
Q
-
V
E
E
A
G
D
K
L
P
A
D
D
K
T
A
I
E
S
A
L
T
A
L
E
T
A
L
K
G
E
D
K
A
A
I
E
A
-
K
M
Q
E
-
L
A
Q
V
S
Q
K
---------------------------------------------------------------------------------------