@TOME V2.3
(Mar 2018)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : M_BR29_EuGene_00000411: (2018-03-20 )
WDLLPSAEQVGKLVPSAEQIGKWVLSKEQIDALFFYQCQVTIHYPGAERGKLLKYLAEPREPIPLPKFQGKLYYAISDSGCKYREYSKGDPWPKGLKQMDCFFGPRCTAIGKRKIVLQV
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------......-...10....----------.-----..-.20---.......--------..30......-.-.40------.....-.-----...50-----------.----.....-...-60-.-..-....-----.--------70--.--.......80-....-..-..------90-----..---...-....100----..--.---.---------------.....---110.-........
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------WDLLP
S
-
A
E
Q
V
G
K
LVP----------
S
-----
A
E
-
Q
I
----
G
K
W
V
L
S
K
--------
E
QI
D
A
L
F
F
Y
Q
-
C
-
Q
V
-------
T
I
HYP-G-----AE
R
G
------------
K
----
L
L
K
Y
L
-AEP-RE-P-IP-LPKF-----Q--------
G
K
--
L
--
Y
Y
A
ISDSGC-KYRE-YS-KG------D------PW---
P
K
G
-
L
K
Q
M
D
------
C
F--F---G---------------PRCTA---I--G-
K
R
K
I
V
L
QV
38
Fugue
55.93
24%
100
- C8 -
-
5MQ6
3
?
A:
[14-655]
PEDLKLHQLSQKYTAEAAKRFRPEGLGQFIRLKEVGNERFRALAEDPWVDHAALNAKEPVKDGSRYKFIILGAGYGGLLYAVRLAEAGLASGPDDILMVDAAGGFGGTWWWNRYPGLHCDVESYSYMPLLEETGYIPKSKYAAGPELLEHAYRIATQWKLHDKALFRSNVKTIR
W
D
---
D
-
E
S
R
L
W
S
L
E
V
----------
T
-----
E
G
-
R
----------
G
P
--------
G
Q
Q
S
R
E
L
K
L
Q
-
A
-
R
Y
-------
V
L
L
A
S
-
G
-----------------------------
I
L
-
T
N
P
-
Q
V
-
P
K
I
P
G
L
E
T
F
-----
T
--------
G
P
--
V
--
F
H
T
A
R
W
N
-----
Y
D
-
V
T
-
G
G
------
S
------
P
T
---
D
E
A
-
L
N
R
L
E
--------------
G
---------------
K
R
V
G
I
---
I
--
G
-
T
G
A
T
A
I
Q
V
36
Fugue
55.21
22%
10
- C5 -
-
4F0D
1
PAR16_HUMAN
A:
[2-271]
--------------------------------------------------------------------------------------------------------------------------MGWAAAREAAGRDMLAADLRCSLFASALQSYKRDSVLRPFPASYARGDCKDF
E
A
L
L
A
D
-
A
S
K
L
P
N
L
K
E
----------
L
-----
L
Q
-
S
S
----
G
D
N
H
K
R
A
--------
W
D
L
V
S
W
I
L
S
S
-
K
-
V
L
-------
T
I
H
S
A
-
G
K----
A
E
F
E
------------
K
----
I
Q
K
L
T
-
G
A
P
-
H
T
-
P
-
V
P
-
A
P
D
F
-----
L
--------
F
E
--
I
--
E
Y
F
D
P
A
N
A
K
-
F
Y
E
T
-
K
G
-
E
R
------
D
-----------------
L
I
Y
------
A
F
--
H
---
G
---------------
S
R
L
E
N
---
F
-----
H
S
I
I
H
N
G
44
SP3
53.87
14%
-26
- C9 -
-
1BF2
-
?
?:
[638-750]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
S
-
G
S
Q
L
T
W
Y
Q
P
----------
S
-----
G
A
-
V
A
----
D
S
N
Y
W
N
N
--------
T
S
N
Y
A
I
A
Y
A
I
-
N
----------------
G
-----
P
S
L
G
------------
D
SNSI
Y
V
A
Y
N
-
G
W
S
-
S
S
V
T
-
F
T
-
L
P
A
P
P----
S
--------
G
T
--
Q
--
W
Y
R
V
T
D
T
C
D
-
W
N
D
---
G
-
A
S
------
T
------
F
V
---
A
P
G
-
S
E
T
L
I
------
G
G
--
A
---
G
---------------
T
T
Y
G
Q
---
C
--
G
-
Q
S
L
L
L
L
I
S
33
Fugue
52.23
16%
-
* C12 *
-
4YO5
-
?
A:
[399-529]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA
L
S
L
E
P
E
-
A
L
Q
I
A
D
N
-
E
----------
G
-----
T
E
-
A
A
----
L
S
W
L
Q
A
R
PGIQS---
D
R
S
N
W
L
L
R
L
L
M
A
-
R
V
-------
A
E
Q
T
G
K
N
-----
D
L
A
L
------------
H
----
L
L
A
E
L
-
D
E
R
-
A
T
-
R
-
L
T
-
L
S
Q
W
-----
E
--------
P
E
--
L
--
V
F
E
V
K
A
R
R
L
-
K
L
L
R
M
K
S
-
A
K
------
T
------
E
S
---
D
R
V
-
R
L
Q
P
D
M-----
E
H
--
L
---
L
---------------
A
G
L
I
A
---
I
--
D
-
A
A
R
A
A
V
L
C
37
Fugue
51.86
15%
-86
- C6 -
-
4UYI
-
SLX4_HUMAN
A:
[662-788]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
Y
F
Q
S
M
-
G
R
T
L
L
S
L
G
L
----------
L
-----
V
A
-
D
F
----
G
A
M
V
N
N
P
--------
H
L
S
D
----------
V
-------
Q
F
Q
T
D
-
S
-----
G
E
V
L
------------
Y
----
A
H
K
F
V
-
L
Y
A
-
R
C
-
P
-
L
L
-
I
Q
Y
V
-----
N
--------
N
E
--
G
--
F
S
A
I
E
D
-
G
V
-
E
T
Q
R
-
V
L
-
L
G
------
D
------
V
S
---
T
E
A
-
A
R
T
F
L
------
H
Y
--
L
---
Y
TADTGLPPGLSSELS
S
L
A
H
R
---
F
--
G
-
V
S
E
L
V
H
L
C
43
SP3
49.21
13%
-66
* C9 *
-
1EKG
-
FRDA_HUMAN
A:
[90-208]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
-
E
T
T
Y
E
R
L
A
-----------------
E
E
-
T
L
----
D
S
L
A
E
F
F
--------
E
D
L
A
D
K
P
Y
T
F
-
E
-
D
Y
-------
D
V
S
F
G
-
S
--------
G
------------
V
----
L
T
V
K
L
-
G
G
D
-
L
G
-
T
-
Y
V
-
I
N
K
Q
-----
T
--------
P
N
--
K
--
Q
I
W
L
S
S
P
S
S
-
G
P
K
R
-
Y
D
W
T
G
------
K
------
N
W
VYS
H
D
G
-
V
S
L
H
E
------
L
L
------
A
---------------
A
E
L
T
K
---
A
--
L
-
K
T
K
L
D
L
S
S
41
Fugue
48.82
16%
10
* C7 *
-
1JTG
-
BLIP_STRCL
B:
[1-165]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
G
V
M
T
-
G
A
K
F
T
Q
I
Q
F
GM--------
T
-----
R
Q
-
Q
V
----
L
D
I
A
G
A
E
NCETGG--
S
F
G
D
S
I
H
C
R
G
-
H
-
A
A
-------
G
D
Y
Y
A
-
Y
-----
A
T
F
G
FTSAAADAKVDS
K
----
S
Q
E
K
L
-
L
A
P
-
S
A
-
P
T
L
T
-
L
A
K
F
-----
N
QVTVGMTR
A
Q
--
V
--
L
A
T
V
G
Q
G
S
C
T
T
W
S
E
-
Y
Y
-
P
A
------
Y
------
P
S
---
T
A
G
V
T
L
S
L
S
------
C
F
--
D
---
V
---------------
D
G
Y
S
S
---
T
--
G
-
F
Y
R
G
S
A
H
L
32
Fugue
48.29
25%
-
* C11 *
-
4X3X
-
ARC_RAT
A:
[278-361]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
S
R
E
-
A
I
Q
R
E
L
D
L
P
----------
Q
-----
K
E
-
P
L
----
D
Q
F
L
W
R
K
--------
R
D
L
Y
Q
T
L
------------------
Y
V
-
D
-----
A
E
E
E
------------
E
----
I
I
Q
Y
V
-
V
G
T
-
L
Q
-------
P
K
F
-----
K
--------
R
F
--
L
--
R
H
-------------------------------
P
L
---
P
K
T
-
L
E
Q
L
I
------
Q
R
---------------------------------
G
M
E
V
Q
D
G
L
E
Q
27
HHSearch
47.74
55%
-188
- C2 -
-
3LQV
-
Q:
[22-32]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
S
D
--------
E
E
L
D
A
M
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
42
SP3
47.06
13%
43
- C9 -
-
1EW4
-
CYAY_ECOLI
A:
[1-106]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-
N
-
D
S
E
F
H
R
L
A
D
----------
Q
LWLTI
E
E
-
R
L
----
D
D
W
D
-
G
D
--------
S
D
I
D
C
E
I
N
-
G
-
G
-
V
L
-------
T
I
T
F
E
-
N
-----
G
--
S
------------
K
----
I
I
I
N
R
-
Q
E
P
-
L
H
-
Q
-
V
W
-
L
A
T
K
-----
Q
--------
G
G
--
Y
--
H
F
D
L
K
G
D
E
W
-
I
C
D
R
-------------------------
S
G
-
E
T
F
W
D
------
L
L
--
E
---
Q
----------------
A
A
T
Q
---
Q
--
A
-
G
E
T
V
S
F
R
-
35
Fugue
45.48
14%
42
- C9 -
-
3GM5
1
?
A:
[9-159]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------SMSKN
I
L
D
M
R
N
-
T
V
Q
I
G
I
V
V
R
----------
D
-----
I
E
-
E
S
----
L
Q
N
Y
A
E
F
FGVEKPQW
F
W
T
D
D
Y
S
K
A
H
-
T
-
K
F
NGRPTKA
R
A
K
L
A
-
F
-----
F
E
L
G
------------
P
----
L
Q
L
E
L
-
I
E
P
D
E
N
-
P
-
S
T
-
W
R
E
F
LDKNG
E
--------
G
I
--
H
--
H
I
A
F
V
V
K
D
M
-
D
R
K
V
-
E
E
-
L
Y
------
R
------
K
G
---
M
K
V
-
I
Q
K
G
D
FEGGRY
A
Y
--
I
---
D
---------------
T
L
R
A
L
---
K
--
V
-
M
I
E
L
L
E
N
Y
34
Fugue
45.18
17%
30
- C8 -
-
4ABY
-
RECN_DEIRA
A:
[32-564]
----------------------------------------------------------------------------------------------------------PRLSRLEIRNLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGF
W
D
--
S
A
-
S
R
R
L
S
S
A
G
R
----------
G
-----
A
A
-
R
L
----
S
G
E
V
V
S
V
--------
R
E
L
Q
E
W
A
--
Q
-
G
-
R
L
-------
T
I
H
W
Q
-
H
-----
S
A
V
S
------------
L
----
L
---------------
S
-
P
A
N
Q
-----
R
--------
G
L
--
L
--
D
R
R
V
T
K
E
A
Q
-
A
Y
A
A
----
A
H
------
A
------
A
W
---
R
E
A
-
V
S
R
L
E
------
R
L
--
L
---
V
---------------
P
R
G
S
V
---
D
--
A
-
L
H
A
E
L
L
K
V
48
SP3
44.92
14%
50
- C- -
-
1C44
-
A:
[1-123]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------SSA
G
D
G
F
K
A
-
N
L
V
F
K
E
I
E
K
----------
K
-----
L
E
-
E
E
----
G
E
Q
F
V
K
K
----------
I
G
G
I
F
A
F
K
-
V
-
K
D
-------
G
---
P
-
G
-----
G
K
E
A
------------
T
----
W
--
V
V
D
V
K
N
-
G
K
-
G
-
S
V
-
L
P
N
S
-----
D
--------
K
K
AD
C
--
T
I
T
M
A
D
S
D
---
L
L
A
-
L
M
-
T
G
------
K
---------------
M
N
P
Q
S
------
A
F
--
F
---
Q
---------------
G
K
L
K
I
---
T
--
G
-
N
M
G
L
A
M
K
L
45
SP3
43.09
11%
-3
- C11 -
-
1AOA
-
?
?:
[260-375]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
-
L
E
E
L
M
K
L
-
S
----------
P
-----
E
E
-
L
L
----
L
R
W
A
N
F
H
--------
L
E
N
S
G
---
W
Q
---
K
I
-------
N
N
F
S
A
-
D
-----
I
K
D
S
------------
K
----
A
Y
F
H
L
-
L
N
Q
-
I
A
-
P
-
K
G
-
Q
K
E
------------------------
G
E
P
R
I
D
I
-
N
M
S
G
-
F
N
-
E
T
------
D
------
D
L
---
K
R
A
-
E
S
M
L
Q
------
Q
A
DK
L
---
G
C--------------
R
Q
F
V
T
PAD
V
VS
G
-
N
P
K
L
N
L
A
F
51
SP3
40.91
15%
33
- C12 -
-
1M2E
-
KAIA_SYNE7
A:
[1-135]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------MLSQIAICI
W
V
E
S
T
A
I
L
Q
D
C
Q
R
A
L
S
ADRYQLQVCE
S
-----
G
E
-
M
L
----
L
E
Y
A
Q
T
H
R-------
D
Q
I
D
C
L
I
L
V
A
----------------
A
-
N
-----
P
S
F
R
------------
A
----
V
V
Q
Q
L
-
C
F
---
E
-
G
-
V
V
-
V
P
A
I
V----
V
--------
G
D
--
R
--
D
S
E
D
P
D
E
P
A
-
K
E
Q
L
-
Y
H
-
S
A
ELHLGI
H
------
Q
L
EQL
P
Y
Q
-
V
D
A
A
L
------
A
E
--
F
LRL
A
---------------
P
V
E
T
M
---
A
------------
47
SP3
39.75
13%
33
- C12 -
-
1CX4
2
KAP3_RAT
A:
[155-301]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------ESFIESLPFL
K
S
L
--
E
-
V
S
E
R
L
K
V
V
D
----------
V
-----
I
G
-
T
K
VYND
G
E
Q
I
I
A
Q
G-------
D
S
A
D
S
F
F
I
V
E
-
S
G
E
V
-------
R
I
T
M
--
K
-----
R
N
G
A
------------
V
----
E
I
A
R
C
-
L
R
G
-
Q
Y
-
F
-
G
E
-
L
A
L
V
-----
T
--------
N
K
--
P
RA
A
S
A
H
A
I
G
T
V
-
K
C
L
A
-
M
D
-
V
Q
------
A
FERLLG
P
C
---
M
E
I
-
M
K
R
N
I
------
A
T
--
Y
---
E
---------------
E
Q
L
V
A
L--
F
--
G
-
T
N
M
D
I
V
--
4
PsiBlast_PDB
35.46
44%
173
- C14 -
-
1BKD
-
SOS1_HUMAN
S:
[1017-1041]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
P
-
R
N
-
P
-
K
P
-
L
P
R
F
-----
P
--------
K
K
--
Y
--
S
Y
P
L
K
S
P
G
V
-
R
---------------------------------------------------------------------------------------
1
PsiBlast_PDB
35.26
44%
173
- C14 -
-
1XDV
-
SOS1_HUMAN
A:
[1017-1041]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
P
-
R
N
-
P
-
K
P
-
L
P
R
F
-----
P
--------
K
K
--
Y
--
S
Y
P
L
K
S
P
G
V
-
R
---------------------------------------------------------------------------------------
24
HHSearch
34.74
38%
-88
* C10 *
-
1SMP
-
INH_DICCH
I:
[5-29]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
P
----------
S
-----
A
A
E
L
S
----
G
Q
W
V
L
S
G
--------
A
------
E
Q
H
-
C
-
D
I
-------
R
L
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
34.56
26%
-194
- C4 -
-
3KEW
-
?
A:
[27-54]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
G
K
F
H
V
L
-
L
-
D
Q
-------
T
A
F
F
P
-
G
GGGQM
G
D
L
G
------------
L
----
I
D
-------------------------------------------------------------------------------------------------------------------------------------------