@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : XP_007282408_1_CG: (2018-03-15 )
GCQIELLNINQQVVDSVCIPHDGVRPMRDATAPKGVINYAVKVNSSCGAGLAAGNLANGASLRNAGPY
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....---....----10..--.....--.20....--..---.-.30..--...-.-..40.------...-..-..--50-..---.-.---.---.----..60.-...--...--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
C
Q
I
E
---
L
L
NI----
N
Q
Q
V
--
V
D
S
VC--IPHDGVR--PM---R-DATAP--K
G
V
-
I
-
N
Y
A
V
K
------VNS-SC-GA--GL-AA---G-N---L---A----NGASL-RNA--GPY--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
70.70
31%
-106
- C5 -
-
2MM2
-
?
A:
[1-65]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
C
T
A
N
---
I
L
N
I
----
N
E
V
V
--
I
A
T
G
C
--
V
P
A
G
G
N
L
--
I
I
---
R
-
V
G
S
D
-------
H
-
S
Y
L
I
R
------
A
T
V
-
S
C
-
G
L
--
S
L
-
N
P
---
S
Q
S
---
F
---
I
----
N
G
E
S
L
-
A
S
G
--
G
R
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
70.43
30%
-112
- C5 -
-
2MM0
-
?
A:
[2-62]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
V
A
N
---
I
L
N
I
----
N
E
A
V
--
I
A
T
G
C
--
V
P
A
G
G
E
L
--
R
I
---
F
-
V
G
S
S
H
--
S
------
Y
L
I
K
------
A
T
S
-
S
C
-
G
L
--
S
L
-
T
N
---
Q
-
V
---
F
---
I
----
N
G
E
S
V
-
Q
S
G
--
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
69.53
32%
-111
- C5 -
-
2MM0
-
?
A:
[1-63]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
C
V
A
N
---
I
L
N
I
----
N
E
A
V
--
I
A
T
G
C
--
V
P
A
G
G
E
L
--
R
I
---
F
-
V
G
S
------
S
-
H
-
S
Y
L
I
K
------
A
T
S
-
S
C
-
G
L
--
S
L
-
T
N
---
Q
-
V
---
F
---
I
----
N
G
E
S
V
-
Q
S
G
--
G
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
69.32
30%
-116
- C5 -
-
2MM2
-
?
A:
[2-63]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
T
A
N
---
I
L
N
I
----
N
E
V
V
--
I
A
T
G
C
--
V
P
A
G
G
N
L
--
I
I
---
R
-
V
G
S
D
H
--
S
------
Y
L
I
R
------
A
T
V
-
S
C
-
G
L
--
S
L
N
P
S
---
Q
-
S
---
F
---
I
----
N
G
E
S
L
-
A
S
G
--
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
59.74
22%
-7
* C7 *
-
1FMC
2
HDHA_ECOLI
A:
[1-255]
-----------------------------------------------------------------------------------------------------------------------------------------------------------MFNSDNLRLDG
K
C
A
I
I
T
GAGAG
I
G
K
E
I
A
I
T
F
A
T
A
G
A
S
V
V
---
V
S
D
I
----
N
A
D
A
--
A
N
H
V
V
D
E
I
Q
Q
L
G
G
Q
--
A
F
A
C
R
C
-
D
I
T
S
E
--
Q
E
L
-
S
-
A
L
A
D
F
------
A
I
S
-
K
L
-
G
---
K
V
-
D
I
---------
L
---
V
----
N
N
A
G
G
-
G
G
P
--
K
P
F
DMP
M
A
D
F
R
R
A
Y
E
L
NV
F
S
F
F
H
L
S
Q
L
V
A
P
E
M
E
K
N
G
G
G
V
I
L
T
I
T
S
MAAE
N
K
N
I
NM
T
S
Y
A
S
S
K
A
A
A
S
H
L
V
R
N
M
A
F
D
L
G
EKN
I
R
V
N
G
I
A
P
G
AILT
D
A
L
K
S
V
IT
P
E
I
E
Q
K
M
L
Q
H
TPIR
R
L
G
Q
P
Q
D
I
A
N
A
A
L
F
L
C
SPAASWVSG
Q
I
L
T
VSGG
G
V
Q
E
LN-------------------------------------------------------------------------------------------------------------------
29
SP3
56.62
23%
21
* C8 *
-
1HM9
1
GLMU_STRPN
A:
[261-468]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
F
VNPEA
T
Y
I
D
ID
V
E
I
A
P
E
V
Q
I
E
A
N
V
I
L
K
G
----
Q
T
K
I
--
G
A
E
T
V
--
L
-
T
N
G
T
Y
---
V
---
V
-
D
S
T
I
G
--
A
G
A
V
I
-
T
N
S
M
I
------
E
E
S
-
S
V
-
A
D
--
G
V
-
T
V
---
G
-
P
Y
A
H
I
---
R
----
P
N
S
S
L
G
A
Q
V
H
I
G
N
F
V
E
V
K
G
S
S
I
G
E
NTKAGHL
T
Y
I
G
NCE
V
G
S
N
V
N
F
G
A
G
T
I
T
V
N
Y
DGK
N
K
Y
K
T
V
I
G
D
N
V
F
V
G
S
N
S
T
I
I
A
P
V
E
L
G
D
N
S
L
V
G
AGSTIT
K
D
V
P
AD
A
I
A
I
G
R
G
R
Q
I
N
K
D
EYATRLPHHPKNQ---------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
51.23
23%
81
- C7 -
-
1R5E
-
?
A:
[29-133]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DN
V
T
S
S
Q
---
L
L
S
V
----
R
H
Q
L
--
A
E
S
A
G
--
L
P
R
D
Q
H
E
--
F
V
---
S
-
S
-
Q
A
P
--
Q
S
L
-
R
-
N
R
Y
N
N
------
L
Y
S
-
H
T
-
Q
R
--
T
L
-
D
M
---
A
-
D
---
M
---
Q
HRYM
T
G
A
S
G
-
I
N
P
--
G
M
L
P
H
E
N
V
D
D
M
R
S
A
I
T
D
W
S
D
M
R
E
A
L
Q
H
A
M
G
I
H
A
D
I------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
SP3
48.58
19%
-36
- C4 -
-
1LCY
-
HTRA2_HUMAN
A:
[226-325]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RRYI
G
--
V
M
---
M
L
T
L
----
S
P
S
I
--
L
A
E
L
-------
Q
L
R
--
E
P
---
S
-
F
P
D
V
Q
--
H
G
V
-
L
-
I
H
K
V
I
------
L
G
S
P
A
H
-
R
A
--
G
L
-
R
P
---
G
-
D
---
V
ILA
I
----
G
E
Q
M
V
-
Q
N
A
--
E
D
V
Y
E
A
V
R
T
QSQLA
V
Q
I
R
RGR
E
T
L
T
L
Y
V
T
P
E
V
T
E-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
SP3
46.60
16%
-19
- C8 -
-
1HV9
1
GLMU_ECOLI
A:
[252-452]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------VMLRDPARFDLR
G
T
L
T
H
G
R
D
V
E
I
D
T
N
V
I
I
E
G
----
N
V
T
L
--
G
H
R
V
K
--
I
-
G
T
G
C
V
---
I
---
K
-
N
S
V
I
G
--
D
D
C
E
I
S
P
Y
T
V
V
------
E
D
A
-
N
L
-
A
A
--
A
C
-
T
I
---
G
-
P
---
F
---
A
----
R
L
R
P
G
-
A
E
L
--
L
E
G
A
H
V
G
N
F
V
E
M
K
K
A
R
L
G
KGSKAGHL
T
Y
L
G
D
A
E
I
G
D
N
V
N
I
G
A
GTITCNYDGA
N
K
F
K
T
I
I
G
D
D
V
F
V
G
S
D
T
Q
L
V
A
P
V
T
V
G
K
G
A
T
I
A
AGTTVT
R
N
V
G
EN
A
L
A
I
SRVP
Q
T
Q
K
E
GWRRP-----------------------------------------------------------------------------------------------------------------------------------------------------------
31
SP3
46.40
17%
0
- C- -
-
1GEG
2
BUDC_KLEPN
A:
[2-256]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------K
K
V
A
L
V
T
GAGQG
I
G
K
A
I
A
L
R
L
V
K
D
G
F
A
V
A
---
I
A
D
Y
----
N
D
A
T
--
A
K
A
V
A
S
E
I
N
Q
A
G
G
H
A
V
A
V
---
K
V
D
V
S
D
R
--
D
Q
V
-
F
-
A
A
V
E
Q
------
A
R
K
-
T
L
-
G
---
G
F
-
D
V
---------
I
---
V
----
N
N
A
G
V
-
A
P
S
--
T
P
I
ESIT
P
E
I
V
D
K
V
Y
N
I
NV
K
G
V
I
W
G
I
Q
A
A
V
E
A
F
K
K
E
G
H
G
G
K
I
I
N
A
C
S
QAGH
V
G
N
P
EL
A
V
Y
S
S
S
K
F
A
V
R
G
L
T
Q
T
A
A
R
D
L
A
PLG
I
T
V
N
G
Y
C
P
G
IVKT
P
M
W
A
E
I
D
R
Q
V
S
E
A
A
GKPLG
Y
G
T
A
E
F
A
K
RITLG
R
L
S
E
P
E
D
V
A
A
C
V
S
Y
L
A
SPDSDYMTG
Q
S
L
L
IDGGMVFN---------------------------------------------------------------------------------------------------------
22
Fugue
45.58
16%
17
- C7 -
-
4RS8
-
?
A:
[9-92]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------YIFLT
P
R
A
Y
I
I
V
H
---
L
L
K
V
G
K
A
K
A
S
E
I
--
S
E
N
T
Q
--
I
P
Y
Q
T
V
I
--
Q
N
---
I
-
R
W
L
L
A
--
E
G
Y
-
V
-
V
K
E
Q
K
GE
E
I
Y
Y
K
L
T
-
D
K
-
G
K
--
Q
M
-
A
T
---
A
-
E
---
L
---
E
----
K
I
R
K
L
-
V
E
V
--
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
44.73
16%
-17
- C7 -
-
2BNK
-
GP167_BPPH2
A:
[65-128]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VNLS
A
C
E
V
A
---
V
L
D
L
----
Y
E
Q
----
S
N
I
R
--
I
P
S
D
I
I
E
--
D
L
---
V
-
N
Q
R
L
Q
--
S
E
-------
Q
E
------
V
L
N
-
Y
I
-
E
T
--
Q
R
-
T
Y
---
W
-
K
---
L
---
E
----
N
Q
K
K
L
-
Y
R
G
--
S
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
44.09
16%
21
- C5 -
-
4C3X
7
?
A:
[23-530]
DWTSECD
V
L
V
V
G
SG
G
G
A
L
T
G
A
Y
T
A
A
A
Q
G
L
T
T
I
V
L
E
KTDRFGGTSAYSGASIWLPGT
Q
V
Q
E
R
A
GLPDS
T
E
N
A
R
T
Y
L
R
A
L
LGDAE
S
E
R
Q
D
A
Y
V
E
T
A
P
A
V
V
A
L
L
E
Q
NPN
I
E
F
E
F
R
A
F
P
D
YYKAEGRMDTGR
S
I
N
P
L
DLDPADIGDLAGKVRPE
L
D
Q
D
R
T
GQDHAPGPMI
G
G
R
A
L
I
G
R
L
L
A
A
V
Q
S
T
GK
A
E
L
R
T
E
S
V
L
T
---
S
L
I
V
----
E
D
G
R
--
V
V
G
A
E
--
V
E
S
G
G
-------------------------
E
T
Q
R
------
I
K
A
-
N
R
-
G
V
--
L
M
-
A
A
---
G
-
G
---
I
---
E
----
G
N
A
E
M
-
R
E
Q
--
A
G
T
PGKAIWSMGPFGANTG
D
A
I
S
A
G
I
A
V
G
G
A
T
A
LLDQAW
F
C
P
G
VEQPDGSAAFMVGVR
G
G
L
V
V
D
SAGERYLNESLP
Y
D
Q
F
G
R
A
M
D
A
H
DDNGSAVP
S
F
M
I
F
D
SREGGGLPAICIPNTA
P
A
K
H
L
E
A
GT
W
V
G
A
DT
L
E
E
L
A
A
K
T
GLP
A
D
A
L
R
S
T
V
E
K
F
N
D
A
A
K
L
GVDEEFHRGEDPYDAFFCPPNGGANAALTAIENGP
F
Y
A
A
R
I
V
LSDLGTKG
G
L
V
T
D
VNG
R
V
L
R
ADGSAIDG
L
Y
A
A
G
NTSASLSGRFYPGPG
V
P
L
G
T
A
M
V
F
S
Y
R
A
A
Q
D
M
A
K
26
SP3
43.91
17%
-25
- C7 -
-
1NYT
2
AROE_ECOLI
A:
[1-271]
------------------------------------------------MET
Y
A
V
F
G
NPIAHSK
S
P
F
I
H
Q
Q
F
A
Q
Q
L
NIE
H
P
Y
G
R
V
LAPIND
F
I
N
T
L
N
A
F
F
S
A
GGK
G
A
N
V
T
V
PF
K
E
E
A
F
A
R
ADELT
E
R
A
A
L
A
GAVN
T
L
M
R
L
EDG
R
L
L
G
D
N
T
D
G
V
G
L
L
S
D
L
E
R
L
SFIRPG
L
R
I
L
L
I
G
AG
G
A
S
R
G
V
L
L
P
L
L
S
L
D
C
A
V
T
---
I
T
N
R
----
T
V
S
R
--
A
E
E
L
A
K
L
F
A
H
T
G
S
I
--
Q
A
---
L
-
S
M
D
E
L
--
E
G
--
H
-
E
F
D
L
I
------
I
N
A
-
T
--
S
S
--
G
I
-
S
G
---
D
-
I
---
P
---
A
----
I
P
S
S
L
-
I
H
P
--
G
I
Y
C
Y
D
MFYQKGKT
P
F
L
A
W
C
E
Q
R
GSK
R
N
A
D
G
L
G
M
L
V
A
Q
A
A
H
A
F
L
L
W
HGVLPDV
E
P
V
I
K
Q
L
Q
E
E
L
S------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
42.22
19%
-110
- C7 -
-
5FXY
-
MTA1_HUMAN
B:
[7-85]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
Q
A
F
---
Y
L
H
T
----
T
K
L
T
--
R
I
A
R
R
--
L
C
R
E
I
L
R
--
P
W
---
H
-
A
A
R
H
P
--
Y
L
P
-
I
-
N
-
S
A
A
------
I
K
A
-
E
C
-
T
A
--
R
L
-
P
E
A
V
R
K
-
P
---
L
---
E
----
A
V
L
R
Y
-
L
E
T
--
H
P
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
40.81
21%
-135
- C6 -
-
5A6W
1
?
C:
[67-85]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
------
S
D
D
-
N
C
-
N
L
--
S
-------
G
-
D
---
F
---
P
----
P
G
W
I
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
39.45
27%
-597
* C9 *
-
1WUI
1
S:
[19-33]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
C
S
E
S
---
V
L
R
A
----
F
E
P
Y
--
I
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
39.32
27%
-597
- C9 -
-
1UBO
1
S:
[19-33]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
C
S
E
S
---
V
L
R
A
----
F
E
P
Y
--
I
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
SP3
39.30
16%
16
* C5 *
-
2PIA
2
?
?:
[1-321]
-------------------------------------------------------------------------------------------------------------------------------------------------------------TTPQEDG
F
L
R
L
K
IA
S
K
E
K
IARD
I
W
S
F
E
L
T
D
PQ
G
A
P
L
P
---
P
F
E
A
----
G
A
N
L
----
T
V
A
--
V
P
N
G
S
R
R
--
T
Y
---
S
-
L
C
N
D
S
QE
R
N
R
-
Y
-
V
I
A
V
K
------
R
D
S
-
N
G
-
R
G
--
G
S
-
I
S
F
I
-
D
-
D
---
T
---
S
----
E
G
D
A
V
-
E
V
S
--
L
P
R
NEFPLDKRAK
S
F
I
L
V
A
G
G
IGI
T
P
M
L
S
M
A
R
Q
L
R
A
E
GL
R
S
F
R
L
Y
Y
L
T
RDPEGTAF
F
D
E
L
T
SDEWRSD
V
K
I
H
H
DHGDPTKAFD
F
W
S
V
F
EKSKPA
Q
H
V
Y
C
C
G
P
Q
A
L
M
D
T
V
R
D
M
T
G
HWPSGT
V
H
F
E
S
FGATNTNAR
E
N
T
P
F
T
V
R
L
SRSG
T
S
F
E
I
P
ANRS
I
L
E
V
L
R
D
A
NV
R
V
P
S
S
CESGTCGSC
K
T
A
L
CSGEADHRDMVLRDDEKGTQIMVC
V
S
R
A
KSA
E
L
V
L
DL-----------------------------------------------
28
SP3
38.41
13%
5
- C5 -
-
1FQT
3
BPHF_PARXL
A:
[4-112]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------M
K
F
T
R
V
C
DRRDVPEG
E
A
L
K
V
E
S
G
G
T
S
V
A
---
I
F
N
V
----
D
G
E
L
F
A
T
Q
D
R
C
---
T
H
G
D
W
---
S
L
---
S
-
D
G
G
Y
L
--
E
G
-------
D
V
------
V
E
C
-
S
L
H
M
G
K
F
C
V
-
R
T
---
G
-
K
---
V
---
K
----
S
P
P
P
C
-
E
A
L
--
K
I
F
P
I
R
I
E
DN
D
V
L
V
DFE
A
G
Y
L
A
P------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------