@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0109: (2017-12-15 )
MELVLPNNYVDLEQEEMMYLDGGGVGRNWWNSRGSFATVLDVGLAIYSGGATIYSAYAIKKAISANRGAITRTLRSLIIKHVGSAAGHLVNTALNVALTVTGFSLGGAIAYGADWADGSLDGYIFA
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........-----10........20........30.....----...40........50...--.....60-........70........80..--------......90........100..--.....110.......120....--------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
E
L
VLPNNY-----VDLE
Q
E
E
M
M
Y
LDGGGVGRNWWNSRG
S
F
----
A
T
V
L
D
V
G
L
A
IYSGGA
T
I
Y
--
S
A
Y
A
I
K
K
-
A
ISAN
R
G
A
I
T
R
T
L
R
S
L
I
I
K
H
V
G
--------
S
A
A
G
H
L
V
N
T
A
L
N
V
A
L
T
V
TGFS--LGG
A
I
AYGADWADGSLDG
Y
I
FA--------------------------------------------------------------
36
Fugue
59.70
26%
31
- C6 -
-
4PKF
3
?
A:
[8-864]
K
V
L
E
Y
KG
K
K
L
N
FTPEDPAEETIPADELHEHLQKPST
A
R
T
K
R
L
K
E
R
CRWKHASAGEFIEKS
V
T
A
G
I
E
R
M
R
Y
L
T
E
A
H
K
A
S
EGKP
E
A
I
R
R
A
L
G
L
A
N
V
L
N
K
S
T
L
V
L
Q
E
DEFIVGYHAEDPN
M
F
P
L
Y
PELS
H
M
A
V
Q
D
Y
L
R
SDYSPQP
A
D
E
A
A
A
I
N
E
Y
W
K
PHS
L
Q
S
K
C
QPYFD
P
A
D
L
G
R
M
Y
Q
VSSMEAPSFASG
Y
N
S
I
V
P
P
Y
E
T
V
L
E
DG
L
L
A
R
I
K
L
A
E
K
H
I
A
E
A
Q
A
D
M
S
TFPWNGTKGL
D
N
I
A
K
I
D
N
W
K
A
M
V
I
A
C
K
A
V
I
S
W
A
R
R
Q
G
R
L
C
K
I
V
A
E
NFETD
P
K
R
Q
A
E
L
L
E
I
A
D
I
C
Q
R
IPAEPCKG
L
K
D
A
M
Q
A
K
F
F
T
F
L
I
C
H
AIE
R
Y
A
S
G
YAQK
E
D
T
L
L
W
P
Y
Y
K
A
S
VVDKKFQPMS
H
M
D
A
V
E
L
V
E
M
E
R
L
K
I
S
E
HGAGKS
R
A
Y
R
E
I
F
PGSN
D
L
F
I
L
T
V
G
GTNAKGEDACN
D
M
T
D
A
I
L
E
A
A
K
R
IRTAEP
S
I
V
F
RYSKKNR
E
K
T
L
R
W
V
F
E
C
I
R
D
GLGYP
S
I
K
H
D
E
I
G
T
E
Q
M
K
E
Y
A
K
F
SLNGNGAT
D
E
E
A
H
NWVNVLC
M
S
P
G
I
H
G
RRKTQKTRSE
G
G
G
S
I
F
P
A
K
L
L
E
I
S
L
N
D
GYDWSYADMQLGPKTGDLSSLKS
F
E
D
V
W
E
A
F
R
K
Q
Y
Q
Y
A
I
N
L
C
I
S
T
K
D
V
S
R
Y
F
E
Q
R
FLQM
P
F
V
S
A
I
D
D
G
C
M
E
L
GMDACALSE
Q
P
N
G
W
H
N
P
I
T
T
I
V
A
A
N
S
L
V
A
I
K
K
LVFEEKKYT
L
E
Q
L
S
Q
A
L
K
A
N
WEGF
E
E
M
R
V
D
F
K
R
APKWGNDD
D
Y
A
D
G
I
I
T
R
F
Y
E
EI
I
G
G
E
M
R
K
I
T
N
Y
SG
G
P
V
M
P
T
G
Q
A
V
G
L
Y
M
E
V
G
S
--
R
T
G
P
T
P
D
G
R
F
----
G
-----
G
E
A
A
D
D
G
G
I
S
P
Y
--
M
---------
G
T
D
K
K
G
P
T
A
V
L
R
S
V
S
-
K
V
Q
K
--------
N
Q
K
G
N
L
L
N
Q
R
L
S
V
P
I
M
R
S
K
H
G
--
F
E
I
W
N
S
Y
I
K
T
W
H
D
L
N
I
D
H
V
Q
F
N
VVS
T
D
E
M
R
A
A
Q
R
EPEKHHD
L
I
V
R
V
S
GYSARFVDIP
T
Y
G
Q
N
T
I
I
A
RQE
Q
D
F
S
A
S
D
L
E
F
L
NVEI
38
Fugue
57.27
20%
-63
- C5 -
-
4TYZ
1
?
A:
[1-109]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------N
I
E
G
V
F
R
K
S
F
-----
P
D
L
A
G
E
T
L
L
---------
D
S
F
N
C
A
W
V
E
----
G
S
A
L
K
Q
G
Y
L
F
I
T
P
H
W
L
C
F
--
Q
S
T
L
A
A
A
-
H
F
S
I
E
Y
D
E
I
K
D
I
I
K
S
K
S
V
K
M
F
E
--------
N
A
--
I
E
V
K
T
H
L
N
D
T
I
F
L
T
N
F
---------
L
Q
R
D
Q
A
Y
S
A
L
M
S
Q
W
L
K
--------------------------------------------------------------
33
Fugue
56.10
25%
-58
- C6 -
-
5HTL
2
?
A:
[5-145]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KLRKR
L
G
D
L
L
V
E
E
G
I
-----
V
S
E
A
Q
L
E
Q
A
L
N
A
Q
K
N
T
G
R
R
L
G
D
T
L
I
S
L
GFLS
E
T
Q
L
L
N
F
L
A
Q
Q
L
S
L
P
V
I
D
LS
R
A
H
V
D
I
D
-
A
V
P
L
L
P
E
V
H
A
R
R
L
R
A
L
V
I
G
R
S
G
D
T
L
R
I
A
M
S
D
P
A
D
L
F
A
Q
E
A
L
L
N
Q
L
P
D
Y
G
F
E
--
F
--
V
I
A
P
E
K
Q
L
V
D
G
F
D
R
Y
Y
-----------------------------------------------------------------
35
Fugue
54.96
18%
-82
- C6 -
-
4HLB
-
?
A:
[21-115]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
S
D
R
F
-----
T
A
F
E
E
E
L
L
A
R
Y
A
D
K
G
------------------
I
R
S
V
D
V
A
A
Y
A
K
G
I
D
I
V
--
F
V
A
A
D
R
K
M
T
R
A
E
F
S
A
I
A
S
R
S
I
R
E
L
K
E
R
F
G
F
--------
D
----------------
K
D
V
P
--
I
G
A
V
L
D
Y
K
K
D
A
A
T
D
T
R
T
R
F
V
L
K
LR------------------------------------------------------------
23
PsiBlast_CBE
53.11
33%
-64
- C6 -
-
4BMV
1
?
H:
[88-155]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
G
M
A
-
Q
S
G
G
F
V
Q
Q
--
T
A
E
G
I
E
R
-
L
I
T
L
N
T
T
A
L
T
R
L
A
A
A
V
A
P
R
F
V
Q
--------
S
G
T
G
A
I
V
N
I
G
-----
S
V
V
G
F
A
PE
F
G
M
S
I
-
Y
G
A
---------------------------------------------------------------------------
24
PsiBlast_CBE
53.03
33%
-63
- C6 -
-
4BMV
1
?
G:
[88-155]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
G
M
A
-
Q
S
G
G
F
V
Q
Q
--
T
A
E
G
I
E
R
-
L
I
T
L
N
T
T
A
L
T
R
L
A
A
A
V
A
P
R
F
V
Q
--------
S
G
T
G
A
I
V
N
I
G
-----
S
V
V
G
F
A
PE
F
G
M
S
I
-
Y
G
A
---------------------------------------------------------------------------
25
PsiBlast_CBE
52.94
33%
-64
- C6 -
-
4BMV
1
?
F:
[88-155]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
G
M
A
-
Q
S
G
G
F
V
Q
Q
--
T
A
E
G
I
E
R
-
L
I
T
L
N
T
T
A
L
T
R
L
A
A
A
V
A
P
R
F
V
Q
--------
S
G
T
G
A
I
V
N
I
G
-----
S
V
V
G
F
A
PE
F
G
M
S
I
-
Y
G
A
---------------------------------------------------------------------------
22
PsiBlast_CBE
52.54
33%
-64
- C6 -
-
4BMV
1
?
I:
[88-156]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
G
M
A
-
Q
S
G
G
F
V
Q
Q
--
T
A
E
G
I
E
R
-
L
I
T
L
N
T
T
A
L
T
R
L
A
A
A
V
A
P
R
F
V
Q
--------
S
G
T
G
A
I
V
N
I
G
-----
S
V
V
G
F
A
PE
F
G
M
S
I
-
Y
G
A
---------------------------------------------------------------------------
28
PsiBlast_CBE
52.52
33%
-65
- C6 -
-
4BMV
1
?
C:
[88-155]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
G
M
A
-
Q
S
G
G
F
V
Q
Q
--
T
A
E
G
I
E
R
-
L
I
T
L
N
T
T
A
L
T
R
L
A
A
A
V
A
P
R
F
V
Q
--------
S
G
T
G
A
I
V
N
I
G
-----
S
V
V
G
F
A
PE
F
G
M
S
I
-
Y
G
A
---------------------------------------------------------------------------
26
PsiBlast_CBE
52.34
33%
-64
- C6 -
-
4BMV
1
?
E:
[88-155]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
G
M
A
-
Q
S
G
G
F
V
Q
Q
--
T
A
E
G
I
E
R
-
L
I
T
L
N
T
T
A
L
T
R
L
A
A
A
V
A
P
R
F
V
Q
--------
S
G
T
G
A
I
V
N
I
G
-----
S
V
V
G
F
A
PE
F
G
M
S
I
-
Y
G
A
---------------------------------------------------------------------------
21
PsiBlast_CBE
52.34
33%
-64
- C6 -
-
4BMV
1
?
J:
[88-156]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
G
M
A
-
Q
S
G
G
F
V
Q
Q
--
T
A
E
G
I
E
R
-
L
I
T
L
N
T
T
A
L
T
R
L
A
A
A
V
A
P
R
F
V
Q
--------
S
G
T
G
A
I
V
N
I
G
-----
S
V
V
G
F
A
PE
F
G
M
S
I
-
Y
G
A
---------------------------------------------------------------------------
29
PsiBlast_CBE
51.96
33%
-65
- C6 -
-
4BMV
1
?
B:
[88-155]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
G
M
A
-
Q
S
G
G
F
V
Q
Q
--
T
A
E
G
I
E
R
-
L
I
T
L
N
T
T
A
L
T
R
L
A
A
A
V
A
P
R
F
V
Q
--------
S
G
T
G
A
I
V
N
I
G
-----
S
V
V
G
F
A
PE
F
G
M
S
I
-
Y
G
A
---------------------------------------------------------------------------
27
PsiBlast_CBE
51.95
33%
-65
- C6 -
-
4BMV
1
?
D:
[88-155]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
A
G
M
A
-
Q
S
G
G
F
V
Q
Q
--
T
A
E
G
I
E
R
-
L
I
T
L
N
T
T
A
L
T
R
L
A
A
A
V
A
P
R
F
V
Q
--------
S
G
T
G
A
I
V
N
I
G
-----
S
V
V
G
F
A
PE
F
G
M
S
I
-
Y
G
A
---------------------------------------------------------------------------
2
PsiBlast_PDB
48.36
26%
-
- C6 -
-
4DFC
-
MFD_ECOLI
A:
[129-191]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
M
K
K
-
G
Q
R
L
S
R
D
A
L
R
T
Q
L
D
S
A
G
Y
R
H
V
D
--------
Q
V
M
E
H
G
E
Y
A
T
R
G
A
L
L
D
L
--
F
P
--
M
G
S
E
L
P
Y
R
L
D
F
F
D
D
E
I
D
S
------------------------------------------------------------------
8
PsiBlast_PDB
43.88
34%
-52
- C6 -
-
4BMV
1
?
A:
[94-137]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
G
F
V
Q
Q
--
T
A
E
G
I
E
R
-
L
I
T
L
N
T
T
A
L
T
R
L
A
A
A
V
A
P
R
F
V
Q
--------
S
G
T
G
A
I
V
N
---------------------------------------------------------------------------------------------------
20
PsiBlast_PDB
43.81
47%
-586
- C7 -
-
1A7R
-
H:
[217-236]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
S
I
T
C
T
V
S
G
F
S
--
L
T
G
---
Y
G
V
N
W
-------------------------------------------------------------------------
17
PsiBlast_PDB
42.88
47%
-524
- C7 -
-
1DVF
-
HVM44_MOUSE
B:
[17-36]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
S
I
T
C
T
V
S
G
F
S
--
L
T
G
---
Y
G
V
N
W
-------------------------------------------------------------------------
15
PsiBlast_PDB
42.88
47%
-573
- C7 -
-
1VFA
-
HVM44_MOUSE
B:
[17-36]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
S
I
T
C
T
V
S
G
F
S
--
L
T
G
---
Y
G
V
N
W
-------------------------------------------------------------------------
14
PsiBlast_PDB
42.37
47%
-590
- C7 -
-
1CIC
-
IGH1M_MOUSE
D:
[17-36]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
S
I
T
C
T
V
S
G
F
S
--
L
T
G
---
Y
G
V
N
W
-------------------------------------------------------------------------
18
PsiBlast_PDB
42.27
47%
-539
* C7 *
-
1KIR
-
HVM44_MOUSE
B:
[17-36]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
S
I
T
C
T
V
S
G
F
S
--
L
T
G
---
Y
G
V
N
W
-------------------------------------------------------------------------