@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0112: (2017-12-15 )
MLIVLISVIVAFLYHKITEYVNNRKIDIVIFLSLLISHFIWNYYFLPIEILIAISGANLLLSFLKKLQTK
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------.........10---.........20------.....----------...30.....--..-----------.40.---....------....-----50.....---.-.-.60........70-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------
M
L
I
V
L
I
S
V
I
V
----
A
F
L
Y
H
K
I
T
E
Y
V------NNR
K
I
----------
D
I
V
I
F
L
S
L
L
I
--
S
H
-----------
F
I
-
W
---
N
Y
Y
F
------
L
P
I
E
-----
I
L
I
A
IS
G
---
A
-
N
-
L
L
L
S
F
L
K
K
LQTK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
64.34
22%
-179
* C6 *
-
1C8C
2
DN7D_SULSO
A:
[1-64]
----------------------------------------------------------------------------------------------------------------------------------
M
A
T
V
----
K
F
K
Y
K
G
E
E
K
Q
V
------
D
I
S
K
I
----------
K
K
V
W
R
V
G
K
M
I
--
S
F
-----------
T
Y
-
D
---
E
G
G
G
------
K
T
G
R
-----
G
A
V
S
E
K
D
---
A
P
K
-
E
L
L
Q
M
L
A
K
Q
---KK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
59.29
22%
-160
- C6 -
-
1BF4
2
DN7D_SULAC
A:
[1-63]
-----------------------------------------------------------------------------------------------------------------------------------
A
T
V
----
K
F
K
Y
K
G
E
E
K
E
V
------
D
I
S
K
I
----------
K
K
V
W
R
V
G
K
M
I
--
S
F
-----------
T
Y
-
D
---
E
G
G
G
------
K
T
G
R
-----
G
A
V
S
E
K
D
---
A
P
K
-
E
L
L
Q
M
L
E
K
Q
K
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
58.11
25%
-96
- C4 -
-
4K7J
3
?
A:
[26-375]
------GLLTDYGNASAS
P
W
M
K
K
L
Q
S
V
A
Q
GSG
E
T
F
R
I
L
Q
I
G
D
S
H
T
A
G
D
F
F
T
D
S
L
R
K
R
L
Q
K
T
WGDGGIGWVYPANVKGQRMAA
V
R
H
N
G
N
W
Q
S
L
T
SRNNTGDFPLGG
I
L
A
H
TGSG
G
S
M
T
L
T
A
SDGI
A
S
K
Q
R
V
S
L
F
A
----
K
P
L
L
A
E
Q
T
L
T
V
------
N
G
N
T
V
S
A
NGG
G
W
Q
V
L
D
T
G
A
A
L
P
L
T
I
--
H
T
-----------
E
M
P
W
---
D
I
G
F
------
I
N
I
E
N
PAG
G
I
T
V
S
A
M
G
---
I
-
N
G
A
Q
L
T
Q
W
S
K
W
R
A
D
R
M
N
D
L
A
Q
TGAD
L
V
I
L
S
Y
G
T
N
E
A
F
NNNID
I
A
D
T
E
Q
K
W
L
D
T
V
R
Q
I
R
D
S
LPA
A
G
I
L
I
I
G
A
PESLKNTLGVCGTRPVR
L
T
E
V
Q
Q
M
Q
R
R
V
A
R
Q
G
Q
T
M
F
W
S
W
Q
N
A
M
GGICS
M
K
N
W
L
N
Q
GWAAKDGVHFS
A
K
G
Y
R
R
A
A
E
M
L
A
D
S
L
E
E
L
V
R
S
A-----------------------------------------------------------------------------------------------------------------
24
Fugue
57.76
21%
-58
- C5 -
-
4YY2
-
?
A:
[5-103]
----------------------------------------------------------------------------------------------------------------------GKS
P
T
E
V
L
L
E
L
I
A
E
A
S
GTT
R
E
E
V
K
E
K
F
L
K
E
L
------
R
K
G
K
S
----------
P
T
E
V
L
L
E
L
I
A
--
E
A
S
GTT
K
E
E
V
K
E
K
F
L
-
K
---
E
L
S
F
GKS
P
T
E
V
L
L
E
-----
L
I
A
E
A
S
G
TT
K
E
-
E
-
V
K
K
K
F
W
K
E
L
S
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
54.97
28%
-166
* C5 *
-
5H35
3
?
C:
[1-195]
---------------------------------------------------------------------------------------------M
Y
M
I
L
E
L
L
N
I
I
G
I
I
A
F
T
I
S
G
S
L
K
G
T
N
K
GLD
I
F
G
V
V
T
L
G
V
I
T
----
S
Y
A
G
G
I
I
A
D
I
L
L
GIYPP
Q
I
L
K
E
----------
L
N
Y
L
L
L
S
V
G
I
--
S
I
-----------
F
V
-
F
---
Y
F
Y
K
WLQT--
N
P
I
K
-----
M
I
I
A
I
S
D
---
A
-
V
-
G
L
S
T
F
A
T
L
G
A
S
L
A
Y
S
Y
GLN
P
I
S
V
G
L
I
A
A
I
V
G
T
G
G
G
V
I
R
D
V
L
V
NEIPMVLTKEIY
A
T
A
A
L
L
S
G
F
I
Y
Y
F
T
TPYLHHD
S
L
F
V
A
F
L
G
S
F
L
L
R
I
L
S
I
K
Y
N
F------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
46.55
33%
-469
- C7 -
-
1WO8
-
MGSA_THET8
A:
[63-80]
-----------------------------------------------------------------------------------------------------------------------------------------------
Q
I
G
A
R
V
------
A
E
G
K
V
----------
L
A
V
V
F
L
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
46.01
16%
-57
- C5 -
-
5UDB
-
ORC4_YEAST
D:
[46-525]
D
P
G
F
G
S
L
Q
R
R
L
L
Q
Q
L
Y
GTLPTDEKIIFTYL
Q
D
C
Q
Q
E
I
D
R
I
I
K
Q
S
I
IQK
E
S
H
S
V
I
L
V
G
P
R
QSY
K
T
Y
L
L
D
Y
E
L
S
L
L
QQSYKEQ
F
I
T
I
R
L
NGFIHSEQTAINGI
A
T
Q
L
E
Q
QTISSGSLTE
V
F
E
K
I
L
L
L
L
D
S
I
T
K
I
T
V
----
V
F
I
F
D
E
I
D
T
F
A
------
G
P
V
R
Q
----------
T
L
L
Y
N
L
F
D
M
V
--
E
H
-----------
S
R
---------------
V
P
V
C
-----
I
F
G
C
T
T
K
---
L
-
N
-
I
L
E
Y
L
E
K
R
V
K
S
R
FSQRVIYMPQ
I
Q
N
L
D
D
M
V
D
A
V
R
N
L
L
TVRSEISPW
V
S
Q
W
N
E
T
L
E
K
E
L
S
DPRSN
L
N
R
H
I
R
M
N
F
E
T
FRS
L
P
T
L
K
N
S
I
I
P
L
V
A
T
SKNFGSLCTAIKSCSF
L
D
I
Y
N
K
N
Q
LSNN
L
T
G
R
L
Q
S
LS
D
L
E
L
A
I
L
I
S
A
A
R
V
A
L
R
AKD
G
S
F
N
F
N
L
A
Y
A
E
Y
E
K
M
I
K
A
I
N
S
R
IP
T
V
A
P
TTNVGTGQSTFSIDNTIKLWLKKDV
K
N
V
W
E
N
L
V
Q
L
DFFTEKSAVGLRDN
A
T
A
A
F
Y
A
S
N
Y
Q
FQGTMIPFDL
R
S
Y
Q
M
QII
L
Q
E
L
R
R
I
IPKSNMYYS
5
HHSearch
44.99
28%
-486
- C7 -
-
1IK4
1
MGSA_ECOLI
A:
[73-90]
-----------------------------------------------------------------------------------------------------------------------------------------------
Q
V
G
A
L
I
------
S
E
G
K
I
----------
D
V
L
I
F
F
W
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
44.58
16%
-148
- C6 -
-
1N87
-
PRP19_YEAST
A:
[1-56]
-----------------------------------------------------------------------------------------------------------------------------------
M
L
C
----
A
I
S
G
K
V
P
R
R
P
V
------
L
S
P
K
S
----------
R
-
T
I
F
E
K
S
L
L
--
E
Q
-----------
Y
V
-
K
---
D
T
G
N
------
D
P
I
-----------
T
N
---
E
-
P
-
L
S
I
E
E
I
V
E
I
V
P
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
44.28
26%
-436
* C7 *
-
2XW6
-
?
A:
[65-83]
-----------------------------------------------------------------------------------------------------------------------------------------------
Q
M
G
A
R
V
------
A
E
G
R
I
----------
L
A
V
I
F
F
R
D
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
42.91
28%
-437
- C7 -
-
1B93
1
MGSA_ECOLI
C:
[73-90]
-----------------------------------------------------------------------------------------------------------------------------------------------
Q
V
G
A
L
I
------
S
E
G
K
I
----------
D
V
L
I
F
F
W
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
42.68
10%
-676
- C1 -
-
1L0V
1
FRDD_ECOLI
P:
[83-92]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
--
H
H
-----------
A
M
-
H
---
D
L
K
I
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
40.76
13%
-166
- C6 -
-
2EBG
-
?
A:
[1-106]
------------------------------------------------------------------------------------------------------------------------------
M
Q
A
V
R
L
F
Q
----
G
Y
L
W
H
P
-----------
R
A
L
A
L
----------
D
L
K
A
L
L
P
G
E
V
AG
A
R
-----------
L
L
-
W
---
D
E
V
P
------
P
P
T
P
-----
F
F
E
--
D
G
---
T
-
P
-
T
H
T
Q
R
F
Y
Q
L
T
L
L
VLTEEPPEAL
K
P
L
A
E
E
A
A
E
A
L
G
E
V
L
E
G
LPPE
V
G
W
L
L
LEDLRPL-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
36.15
41%
-25
- C7 -
-
2DT7
-
SF3A3_HUMAN
A:
[74-90]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
G
---
P
-
N
-
E
F
A
E
F
Y
N
R
L
K
Q
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
29.84
54%
-182
- C2 -
-
2IXN
-
PTPA2_YEAST
A:
[186-201]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
--
S
H
-----------
G
V
-
W
GLD
D
Y
H
F
------
L
P
F
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
26.46
19%
-2
- C7 -
-
1IFK
-
CAPSD_BPIF1
A:
[29-49]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
V
L
V
V
G
---
A
-
T
-
V
G
I
K
L
F
K
K
F
V
S
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
22.31
23%
59
- C7 -
-
1IFL
-
CAPSD_BPIKE
A:
[30-51]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
-----
V
V
T
T
V
V
V
---
A
-
G
-
L
V
I
R
L
F
K
K
F
S
S
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
21.26
16%
-178
- C7 -
-
5F15
3
?
A:
[341-371]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
R
-----------
S
K
-
L
---
P
G
Y
I
------
V
P
V
I
-----
P
A
L
G
I
L
A
---
G
-
V
-
A
L
D
R
L
S
P
R
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
20.70
36%
-128
- C3 -
-
2IXM
-
PTPA_HUMAN
A:
[205-221]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
--
S
Q
-----------
G
V
-
W
GLD
D
F
Q
F
------
L
P
F
I
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
20.33
16%
-208
- C7 -
-
5EZM
3
?
A:
[341-371]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
R
-----------
S
K
-
L
---
P
G
Y
I
------
V
P
V
I
-----
P
A
L
G
I
L
A
---
G
-
V
-
A
L
D
R
L
S
P
R
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------