@TOME V2.3
(Mar 2018)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0115: (2017-12-15 )
MELVLPNNYVALEQEEMMYLDGGFSILRWPVATAINIAFNGVLGGGAISLVRNYIRNYGLGRVTSAIAGAAARYVGVRVANRVAGFALSAINGFAAWMSIGDAITTIWANNDVNRRDPNLNALW
Atome Classification :
(18 SA)
---------------------------------------------------------------------------------------------------------------------------------------------.........10........20---------........30........40........50...-.....---60---.........70........80........90........100--.......110.......120..-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------M
E
L
VLPN
N
Y
V
A
LEQ
E
E
M
M
Y
LD---------GG
F
S
I
LRWPV
A
T
A
I
N
I
A
F
NGVLG
G
G
A
I
S
L
V
R
N
Y
-
I
R
NYG---
L
----
G
R
V
T
S
A
I
A
G
A
A
A
R
Y
V
G
V
R
V
A
N
R
V
A
G
F
A
L
S
A
I
N
G
F
A
A
W
M
S
IGD--
A
I
T
T
I
W
ANNDVNRRDPNLNALW-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
55.47
20%
31
* C6 *
-
5TSE
1
?
A:
[8-143]
-------------------------------------------------------------------------------------------------------------------------------------ATPLVYK
K
L
S
L
E
L
P
A
K
T
D
D
L
E
T
Q
L
K
V
Y
L
T
A
N
GVQLSND
N
D
A
Y
V
L
R
V
L
E
Y
T
P
R
R
Q
L
L
N
G
K
L
T
E
V
L
L
R
L
T
V
T
F
Q
I
E
D
R
Q
---
G
----
N
K
I
T
E
P
R
T
L
T
A
A
R
S
Y
Q
Y
D
L
A
T
V
N
T
E
N
Q
Q
E
S
Y
L
Q
R
I
V
I
D
D
L
A
Q
--
Q
I
T
R
Q
I
S
A
N
R
L
P
K
A
Q
P
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
55.32
20%
-29
- C6 -
-
4LLG
-
RPOD_ECOLI
F:
[6-612]
QS
Q
L
K
L
L
V
T
R
G
K
EQGYLT
Y
A
E
V
N
D
H
LPEDIVDSD
Q
I
E
D
I
I
Q
M
I
N
D
MGIQVMGRTTDP
V
R
M
Y
M
R
E
M
G
T
V
E
L
L
T
R
E
G
E
I
D
I
A
K
R
I
E
D
G
I
N
Q
V
Q
C
S
V
A
E
Y
P
E
A
I
T
Y
L
L
E
Q
Y
D
R
V
E
A
EEARLSDLITGFVDD
P
E
L
A
R
E
K
F
A
E
L
R
A
Q
Y
V
V
T
R
D
T
I
K
A
T
A
Q
E
E
I
L
K
L
S
---------
E
V
F
K
Q
F
R
L
------------------
V
P
K
Q
F
D
Y
-
L
V
N
S
M
---------
R
V
M
M
D
R
V
R
T
Q
E
R
L
I
M
K
L
C
V
E
Q
C
K
M
P
K
K
N
F
I
T
L
F
T
-----
G
N
--
E
T
S
D
T
W
F
N
A
A
I
A
M
N
K
P
W
S
E
K
L
H
DV
S
E
E
V
H
R
A
L
Q
K
L
Q
Q
I
E
E
E
T
GLT
I
E
Q
V
K
D
I
N
R
R
M
S
I
G
E
A
K
A
R
R
A
K
K
E
M
V
E
A
N
L
R
L
V
I
S
I
A
K
K
Y
TNRGLQ
F
L
D
L
I
Q
E
G
N
I
G
L
M
K
A
V
D
K
FEYRRGYK
F
S
T
Y
A
T
W
W
I
R
Q
A
I
T
R
S
I
A
D
QART
I
R
I
P
V
H
M
I
E
T
I
N
K
L
N
R
I
S
R
Q
M
LQEMGREPTPEELAERMLMPEDK
I
R
K
V
L
K
IAKEPISMETPIGDDEDSHLGDFIEDTTLEL
P
L
D
S
A
T
T
E
S
L
R
A
A
T
H
D
V
L
A
G
LT
A
R
E
A
K
V
L
R
M
R
F
GIDMNTDYT
L
E
E
V
G
K
Q
F
DVTR
E
R
I
R
Q
I
E
A
K
A
L
R
K
L
RHP
S
R
S
E
V
L
RSFLD
4
HHSearch
42.95
33%
-676
- C1 -
-
1O83
1
?
B:
[59-64]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
K
K
K
G
---
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
40.75
13%
-5
* C5 *
-
1WPI
-
FMP46_YEAST
A:
[1-133]
--------------------------------------------------------------------------------------------------------------------------------MSFWKTL
Q
R
Q
P
R
T
I
S
L
F
T
N
D
I
A
S
N
I
K
S
Q
K
C
L
Q
L
L
---------
K
G
D
V
S
H
R
F
D
V
E
I
A
N
R
F
P
T
-----
W
D
Q
L
Q
Y
M
R
T
S
-
C
P
Q
-
G
---
P
----
V
S
L
Q
R
Q
I
P
K
-
L
D
S
V
L
K
Y
K
H
T
D
P
T
F
G
M
D
L
Q
K
C
V
Q
R
G
L
W
-
N
P
K
E
--
A
L
W
V
D
W
E
N
K
L
V
G
N
E
P
A
D
I
D
K
Y
I
IQRK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
33.85
9%
-120
- C5 -
-
1F13
-
F13A_HUMAN
A:
[191-515]
--------------------------------------------------------------------DAVYLDN
E
K
E
R
E
E
Y
VLND
I
G
V
I
F
Y
G
E
VN
D
I
K
T
R
S
W
S
YGQFEDG
I
L
D
T
C
L
Y
V
M
D
R
A
QMDLSGRGN
P
I
K
V
S
R
V
G
S
A
M
V
N
A
K
D
D
E
G
V
L
V
G
S
W
D
N
I
Y
A
---------
Y
G
V
P
P
S
A
W
T
G
S
V
D
I
L
L
E
Y
R
S
S
----------
E
N
-
P
V
R
Y
G
---
Q
----
C
W
V
F
A
G
V
F
N
T
F
L
R
C
L
G
I
---------
P
A
R
I
V
T
N
Y
F
S
A
H
D
N
D
A
NL
Q
M
D
I
F
L
E
E
D
G
N
V
N
S
K
L
T
K
D
S
V
W
N
Y
H
C
W
N
E
A
W
M
T
R
PDLPVGFG
G
W
Q
A
V
D
STPQENSDGM
Y
R
C
G
PAS
V
Q
A
I
K
H
GHVCFQFD
A
P
F
V
F
A
E
V
N
S
D
L
I
Y
I
T
AKKDG
T
H
V
V
E
N
VDATHIGK
L
I
V
T
K
Q
IGGD
G
M
M
D
ITDTYKFQEGQ
E
E
E
R
L
A
L
E
T
A
L
M
Y
GAKKPLNTEGVMKSR----------------------------------------------------------------------------------------------------------------------------------------
13
Fugue
33.36
16%
-23
- C5 -
-
5FRF
-
RSRA_STRCO
A:
[1-108]
------------------------------------------------------------------------------------------------------------------------------------------GSH
M
S
A
G
E
P
H
E
T
D
C
S
E
I
L
D
H
L
Y
E
F
---------
L
D
K
E
-
M
P
D
S
D
A
V
K
F
E
H
H
F
E
E
S
---------
S
P
C
-
L
E
K
Y
G
---
L
-------
E
Q
A
V
K
K
L
V
K
R
A
A
G
---
Q
D
D
V
P
G
D
L
R
A
K
V
M
G
R
L
D
L
I
R
S
G
Q
--
S
V
P
E
H
D
V
A
A
A
P
S
S
S
A
P
Q
E
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
28.34
37%
-401
- C7 -
-
4JIU
-
?
A:
[40-58]
-----------------------------------------------------------------------------------------------------------------------------------------------
I
T
L
D
P
A
V
L
N
L
E
E
E
E
M
F
Y
I
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
27.74
13%
-150
- C4 -
-
2JOV
-
?
A:
[1-85]
---------------------------------------------------------------------------------------------------------------------------------------------
M
H
K
D
I
F
T
S
V
V
R
V
R
-----------------
G
S
K
K
Y
N
V
V
P
V
K
S
N
K
P
V
E
---------
I
S
K
W
I
D
F
-
S
N
V
L
S
---
R
----
L
Y
V
G
V
P
T
K
------
S
G
N
V
V
C
K
N
I
M
N
T
G
-------------------
V
D
I
I
C
T
K
N
L
P
K
D
S
L
E
H
H
H
H
H
H----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
27.22
22%
-342
- C3 -
-
4RGD
-
?
B:
[56-64]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
E
-
I
K
K
K
G
---
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
26.53
22%
-87
* C7 *
-
2RQP
-
HP1B3_HUMAN
A:
[176-211]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
G
A
S
V
V
A
I
R
K
Y
-
I
I
H
K
Y
---
P
SLEL
E
R
R
G
Y
L
L
K
Q
A
L
K
R
E
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
24.92
26%
-70
- C6 -
-
1Q90
3
M:
[2-35]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
A
E
F
I
A
G
T
A
L
T
M
V
G
M
T
L
V
G
L
A
I
G
F
V
L
L
R
V
E
S
L
V
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
23.60
27%
-215
- C2 -
-
2MP8
-
?
A:
[49-59]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
S
L
-
I
K
K
Y
G
---
A
----
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
22.86
44%
-113
- C7 -
-
5HXV
-
?
A:
[136-163]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Y
W
S
V
R
T
E
K
R
V
G
G
T
V
T
T
A
-
N
H
F
A
A
W
K
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
21.80
44%
-93
- C7 -
-
3WP3
-
XYNC_TALFU
A:
[169-196]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Y
W
S
V
R
T
E
K
R
V
G
G
T
V
T
T
A
-
N
H
F
A
A
W
K
A
L
G
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
21.07
9%
-6
- C6 -
-
3SJA
-
GET1_YEAST
C:
[1-61]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
E
L
S
K
K
Y
L
A
K
V
K
E
R
H
E
L
K
E
F
N
N
S
I
S
A
Q
D
N
Y
A
K
W
T
K
N
N
R
--
K
L
D
S
L
D
K
E
I
N
N
L
K
D
E
I
Q
S
E
N
H
H
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
16.69
10%
-299
- C7 -
-
1AYO
-
A2MG_BOVIN
A:
[44-64]
---------------------------------------------------------------------------------------------------------------------------------------------
V
D
V
K
M
V
S
G
F
I
P
L
K
P
T
V
K
M
L
E
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
16.41
28%
-2
- C7 -
-
2K6L
-
?
B:
[19-46]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
M
F
-
I
A
A
Q
G
GGR
K
----
G
D
L
S
R
F
I
E
D
A
V
R
A
Y
L
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
11.08
19%
-147
- C7 -
-
1TY4
-
EGL1_CAEEL
C:
[53-68]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
I
G
S
--
K
L
A
A
M
C
D
D
F
D
A
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------