@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr1914: (2018-01-22 )
MLKKYFSKYKWTDLFWILFVILTCLYIGNHDLFTLNHQEFSFRGSVWGLVLALYHLLFIDKFVISNRK
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------.........10.-----.--------......20------...--......30.------------..-.....40.........50.........60....------...--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------
M
L
K
K
Y
F
S
KYK
W
T
-----
D
--------
L
F
W
I
L
F
V
-------
I
L
T
--
C
L
Y
IGNH
D
L
------------
F
T
-LNHQ
E
F
-SFR
G
S
V
W
G
L
V
-
L
A
L
Y
H
L
L
F
I
D
K
F
V
IS------NRK--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
58.46
22%
-82
- C3 -
-
2JVE
-
?
A:
[18-88]
-----------------------------------------------------------------------------
M
A
L
K
C
F
T
R
N
G
D
D
-----
R
--------------
T
-------
V
T
T
--
C
A
E
E
Q
T
R
C
L
------------
F
V
Q
L
P
Y
S
E
I
-
Q
E
C
K
T
V
Q
Q
C
A
-
E
V
L
E
E
V
T
A
I
G
Y
P
A
K
C
C
C
E
DLC
N
R
S
EQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
54.10
16%
-70
- C4 -
-
1AIL
-
NS1_I72A2
A:
[1-70]
-----------------------------------------------------------------------------
M
D
S
N
T
V
S
S
F
Q
V
D
-----
C
--------
F
L
W
H
V
R
K
-------
Q
V
V
--
D
Q
E
L
G
D
A
P
F
------------
L
D
R
L
R
R
D
Q
K
-
S
L
R
G
R
G
S
T
L
G
-
L
N
I
E
A
A
T
H
V
G
K
Q
I
V
E
------
K
I
L
K-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
50.50
15%
-40
- C3 -
-
1XIP
-
NU159_YEAST
A:
[1-381]
A
S
S
L
K
D
E
V
P
T
E
TSED
F
G
F
K
FLGQKQILPSFNEKLPFASLQN
L
D
I
S
NSKS
L
F
V
A
A
S
GS
K
A
V
V
G
E
L
Q
L
L
R
D
H
I
T
S
DS
T
P
L
T
F
K
W
E
K
E
I
P
-------
D
--------
V
I
F
V
C
F
H
-------
G
D
Q
--
V
L
V
S
T
R
N
A
L
------------
Y
S
-
L
D
L
E
E
L
-
S
E
F
R
T
V
T
S
F
E
-
K
P
V
F
Q
L
K
N
V
N
N
T
L
V
I
------
L
N
S
VN
D
L
S
A
L
D
LRTK
S
T
K
Q
L
A
QNVT
S
F
D
V
T
NS
Q
L
A
V
L
L
KDR
S
F
Q
S
F
AWRNGEMEKQ
F
E
F
S
L
P
SELEELPVEEYSPL
S
V
T
I
LSPQ
D
F
L
A
V
F
G
N
V
I
S
ETDD
E
V
S
Y
D
Q
K
M
Y
I
I
K
H
I
DG
S
A
S
F
Q
E
T
FDITPPFGQIVRF
P
Y
M
Y
K
V
T
L
S
GLIEPD
A
N
V
N
V
L
A
S
SCSS
E
V
S
I
W
DSK
Q
V
I
E
P
SQDSE
R
A
V
L
P
I
S
EETD
K
D
T
N
P
I
G
V
A
V
D
VVTSGL
P
L
V
Y
I
L
N
NEG
S
L
Q
I
V
G
L
F
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
50.27
15%
-14
- C3 -
-
5F9H
2
DDX58_HUMAN
A:
[11-692]
---------FKPR
N
Y
Q
L
E
L
A
L
PAMKGKN
T
I
I
C
A
P
TGCG
K
T
F
V
S
L
L
I
C
E
H
H
L
K
K
FPQG
Q
K
G
K
V
V
F
F
A
NQ
I
P
V
Y
E
Q
Q
K
S
V
F
S
K
Y
F
E
R
H
G
-----------------
Y
R
V
T
G
I
S
GATAEN
V
P
V
--
E
Q
I
V
E
N
N
D
I
------------
I
I
-
L
T
P
Q
I
L
-
V
N
N
L
K
K
G
T
I
P
S
L
S
I
F
T
L
M
I
F
D
E
C
H
N
T
------
S
K
Q
H
P
Y
N
M
I
M
F
N
Y
L
D
Q
K
L
GGSSGPL
P
Q
V
I
G
L
T
ASVGVGDAKN
T
D
E
A
L
D
Y
I
C
K
L
C
A
S
L
DAS
V
I
A
T
V
K
HN
L
E
E
L
E
Q
V
V
Y
K
P
Q
K
F
F
R
K
V
E
S
RISD
K
F
K
Y
I
I
A
Q
L
M
R
D
T
E
S
L
A
K
R
I
C
KDLREFGT
Q
K
Y
E
Q
W
I
V
T
V
Q
K
A
C
M
V
FQMPDK
D
E
E
S
R
I
C
K
A
L
F
L
Y
T
S
H
L
R
K
Y
N
D
A
L
I
I
S
E
H
AR
M
K
D
A
L
D
Y
L
K
D
F
F
S
N
V
R
AAFDEI
E
Q
D
L
T
Q
R
F
E
E
K
L
Q
E
L
E
S
V
S
R
DPSNEN
P
K
L
E
D
L
C
F
I
L
Q
E
E
Y
H
L
NPE
T
I
T
I
L
F
V
KT
R
A
L
V
D
A
L
K
N
W
I
E
G
NPKLSF
L
K
P
G
I
L
T
G
RDHN
I
L
I
A
TSVADEGIDIAQCN
L
V
I
L
Y
E
Y
V
G
N
V
I
K
M
I
Q
T
R
G
RGRARG
S
K
C
F
L
L
T
SN
A
G
V
I
E
K
E
Q
I
N
M
Y
K
E
K
M
M
N
D
S
I
L
R
L
Q
T
WD
E
A
V
F
R
E
K
I
L
H
I
Q
T
H
E
K
F
I
R
D
S
QPKPVPDKE
N
K
K
L
L
C
RKCKALACYTAD
V
R
V
I
EE
C
H
Y
T
V
L
G
D
A
F
K
E
C
F
VSRPHP
K
P
K
Q
F
SS
F
E
K
R
A
K
I
F
C
ARQNCSHDW
G
I
H
V
K
Y
KT
F
E
I
P
V
I
K
IES
F
V
V
E
D
IATG
V
Q
T
L
Y
SKWKDFH
F
E
K
I
P
FDPAE
20
Fugue
49.06
16%
-31
- C4 -
-
2HL7
2
CCMH_PSEAE
A:
[1-82]
------------------------------------------------------------------------GSHMA
I
D
T
Y
E
F
A
S
D
A
E
R
-----
E
--------
R
F
R
N
L
T
Q
-------
E
L
R
--
C
P
K
C
Q
N
Q
D
I
------------
A
D
-
S
N
A
P
I
A
A
D
L
R
K
Q
I
Y
G
Q
L
-
Q
Q
G
K
S
D
G
E
I
V
D
Y
M
V
A
------
R
Y
G
DF
V
R
Y
K
P
P------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
46.18
32%
-103
- C4 -
-
5GPJ
-
AVP_VIGRR
A:
[90-133]
----------------------------------------------------------------------------------
F
T
E
Y
K
Y
V
-----
G
--------
I
F
M
V
A
F
A
-------
I
L
I
--
F
L
F
L
G
S
V
E
G
------------
F
S
-
T
S
P
Q
A
C
-
S
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
44.42
32%
-93
- C4 -
-
4A01
2
AVP_VIGRR
A:
[90-126]
----------------------------------------------------------------------------------
F
T
E
Y
K
Y
V
-----
G
--------
I
F
M
V
A
F
A
-------
I
L
I
--
F
L
F
L
G
S
V
E
G
------------
F
S
-
T
S
P
Q
A
C
-
S
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
44.03
21%
-206
- C5 -
-
1F2N
-
?
C:
[92-105]
-------------------------------------------------------------------------------
A
R
C
Y
S
M
W
K
P
T
-----
R
--------
W
D
V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
40.79
10%
-200
* C4 *
-
2KSE
-
QSEC_ECOLI
A:
[1-186]
-----------------------------------------------------------------------------
M
G
K
F
T
Q
R
L
S
L
R
V
-----
R
--------
L
T
L
I
F
L
I
-------
L
A
S
--
V
T
W
L
L
S
S
F
V
A
WKQTTDNWEYR
E
D
-
M
A
L
A
I
V
-
A
G
Q
L
I
P
W
L
V
A
-
L
P
I
M
L
I
I
M
M
V
L
L
---------
G
R
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
40.66
17%
-21
- C2 -
-
2CME
1
ORF9B_CVHSA
A:
[1-78]
--------------------------------------------------------------------------V
P
P
A
L
H
L
V
D
P
Q
I
Q
L
T
ITAD
P
K
--------
V
Y
P
I
I
L
R
-------
L
G
S
N
L
S
L
S
M
A
R
R
N
L
------------
D
S
-
L
E
A
R
A
F
-
Q
S
T
P
I
V
V
Q
M
T
-
K
L
A
T
T
E
E
L
P
D
E
F
V
V
V
------
T
A
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
38.20
31%
-
- C5 -
-
1VB4
-
?
A:
[77-89]
--------------------------------------------------------------------------------
A
N
W
S
K
Y
S
W
L
-----
S
--------
V
R
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
37.56
31%
-
- C5 -
-
1X36
-
?
A:
[82-94]
--------------------------------------------------------------------------------
A
N
W
S
K
Y
S
W
L
-----
S
--------
V
R
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
36.39
27%
-184
- C1 -
-
3PIL
-
MSRA_YEAST
A:
[23-33]
-----------------------------------------------------------------------------------------------------------------------------------------------------------
C
G
C
F
W
G
T
E
-
H
M
Y
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
35.81
23%
-
- C5 -
-
2IZW
-
?
C:
[106-118]
--------------------------------------------------------------------------------
S
R
Y
S
K
Y
R
V
R
-----
Y
--------
A
H
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
33.94
7%
-26
* C3 *
-
2KON
-
?
A:
[1-82]
-----------------------------------------------------------------------------
M
N
V
A
H
Y
R
G
Y
E
I
E
-----
P
G
H
Q
Y
R
DDI
R
K
Y
V
P
Y
A
-------
L
I
R
--
K
V
G
V
P
D
R
T
P
------------
I
P
-
T
T
Y
P
E
F
Y
D
L
E
A
D
A
E
R
V
S
-
I
A
C
A
K
I
I
I
D
S
H
L
D
R
H
------
D
Q
G
LADLG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
33.46
23%
-
* C5 *
-
2IZW
-
?
B:
[106-118]
--------------------------------------------------------------------------------
S
R
Y
S
K
Y
R
V
R
-----
Y
--------
A
H
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
33.32
31%
-109
- C4 -
-
5L22
-
?
B:
[10-45]
-----------------------------------------------------------------------------
V
L
R
S
Y
L
A
K
Y
K
K
T
-----
L
--------
I
I
V
G
L
F
S
-------
L
F
I
--
N
I
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
32.79
31%
-
- C5 -
-
2WLP
-
?
A:
[113-130]
--------------------------------------------------------------------------------
A
N
W
S
K
Y
S
W
L
-----
S
--------
V
R
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
32.44
8%
-
- C5 -
-
1NG0
-
?
B:
[103-115]
--------------------------------------------------------------------------------
K
A
Y
A
L
W
R
P
K
-----
H
--------
W
E
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
31.98
8%
-
- C5 -
-
1NG0
-
?
C:
[103-115]
--------------------------------------------------------------------------------
K
A
Y
A
L
W
R
P
K
-----
H
--------
W
E
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------