@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VKR9: (2017-10-28 )
MEINPNSQQPTGSSLPTSALGNIQRPGEYLRQIRVSQKKELEQVSSDLNMPLKTLNALEQDDYKSLPEATFIKGYYRSYAKYLNTDATAIIQRFDEIYANDTGLLPNHALNNSPIKIMGKLPGSNSDRNKKWLKRALLAILIIAVVSLIVMGVQKWTSNKEDAELPKANQSNVEVLPMKGNASATVGDQLVLNFNRPTSVHIVDATGKVLATGRQASTLTLNGESPFQIRLDDATAVSLSLNQEQISLSPYTVNGKAEFRLSR
Atome Classification :
(20 SA)
-----.........10....----....20........30......----..40........----50........60----........---.70..--......80........90.--------..-.....100..--.....110---.......120...-----------------------------------....130...---....140.-------------......150.......160....----...170.------....---------..180......--------------.190.......200.......210.......220.......230.......240---.......250...----------....260.------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----MEINPNSQQPTGSSL----
P
T
S
A
LGNIQ
R
P
G
E
Y
L
R
Q
I
R
V
S
Q
----
K
K
E
L
E
Q
V
S
S
DLN----M
P
L
K
T
L
N
A
L
E
Q
-----
D
D
Y
KSL
P
E
---
A
T
F
I
K
--
G
Y
Y
R
S
Y
A
K
Y
LNT
D
A
T
A
I
I
Q
--------
R
F
-
D
E
I
YANDTGL--LPNHALNN---S
P
I
K
I
M
G
KLPGSN-----------------------------------S
D
R
N
K
K
W
L
K
R
---
A
L
L
A
I
L
I
I
-------------
A
V
V
S
L
I
V
M
G
V
Q
K
WTSNKEDAELP----KANQSN
V
------
E
V
L
P
---------MKGNASATVG
D
--------------
Q
L
V
L
NFNRP
T
S
V
H
I
VDATG
K
V
L
ATGR
Q
A
S
T
L
T
LNGES
P
F
Q
I
RLDDA
T
A
V
S
L
S
LN---
Q
E
Q
I
SLS
P
Y
T
VNG----------
K
A
E
F
R
LSR------------------------------
2
PsiBlast_PDB
69.64
26%
-101
- C3 -
-
3FYM
-
?
A:
[5-79]
-----------------------------------
G
E
A
L
K
G
R
R
E
R
L
----
G
M
T
L
T
E
L
E
Q
R
T
G
----
I
K
R
E
M
L
V
H
I
E
N
-----
N
E
F
D
Q
L
P
N
---
K
N
Y
S
E
--
G
F
I
R
K
Y
A
S
V
V
N
I
E
P
N
Q
L
I
Q
--------
A
H
Q
D
E
I
P
S
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
66.15
21%
-105
- C3 -
-
3FYM
-
?
A:
[2-77]
--------------------------------
K
T
V
G
E
A
L
K
G
R
R
E
R
L
----
G
M
T
L
T
E
L
E
Q
R
T
G
----
I
K
R
E
M
L
V
H
I
E
N
-----
N
E
F
D
Q
L
P
N
---
K
N
Y
S
E
--
G
F
I
R
K
Y
A
S
V
V
N
I
E
P
N
Q
L
I
Q
--------
A
H
-
Q
D
E
I
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
Fugue
65.94
19%
-89
- C3 -
-
3FYM
-
?
A:
[2-83]
--------------------------------
K
T
V
G
E
A
L
K
G
R
R
E
R
L
----
G
M
T
L
T
E
L
E
Q
R
T
G
----
I
K
R
E
M
L
V
H
I
E
N
-----
N
E
F
D
Q
L
P
N
---
K
N
Y
S
E
--
G
F
I
R
K
Y
A
S
V
V
N
I
E
P
N
Q
L
I
Q
--------
A
H
-
Q
D
E
I
P
S
N
Q
A
E
--
W
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
57.64
10%
-98
- C3 -
-
4I6R
4
?
A:
[6-76]
----------------------------
S
F
L
L
S
K
V
S
F
V
I
K
K
I
R
L
E
K
----
G
M
T
Q
E
D
L
A
Y
K
S
N
----
L
D
R
T
Y
I
S
G
I
E
R
-----
N
S
R
N
L
-
T
--------
I
--
K
S
L
E
L
I
M
K
G
L
E
V
S
D
V
V
F
F
E
--------
M
L
-
I
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
57.61
16%
39
- C2 -
-
4CI2
1
CRBN_CHICK
B:
[71-451]
------
M
I
N
F
D
T
S
L
P
T
S
H
M
Y
LGSD
M
E
E
F
H
G
R
T
L
H
D
D
D
S
C
Q
V
I
P
V
L
P
----
H
V
M
V
M
L
I
P
G
Q
-
T
----
L
P
L
Q
L
F
H
P
Q
E
V
-----
S
M
V
R
N
L
I
Q
KDR
T
F
A
V
L
--
A
Y
S
N
V
R
E
R
E
A
H
F
G
T
T
A
E
I
Y
--------
A
Y
-
R
E
E
Q
E
Y
G
I
E
T
--
V
K
V
K
A
I
G
R
---
Q
R
F
K
V
L
E
I
R
T
Q
S
D
G
I
Q
Q
A
K
V
Q
I
L
P
E
R
V
L
P
S
TMSAVQLQSLSRRHIRAF
R
Q
W
W
Q
K
Y
Q
K
R
---
K
F
H
C
A
S
L
T
SWP
P
W
L
Y
S
L
Y
D
A
E
T
L
M
E
R
V
K
R
Q
L
H
E
W
D
E
N
L
K
D
E
S
L
P
TN
P
I
D
F
S
Y
R
V
A
------
A
C
L
P
ID
D
A
L
R
I
Q
L
L
K
I
G
S
A
I
Q
R
L
R
--------------
C
E
L
D
I
M
N
K
C
T
S
L
C
C
K
Q
C
Q
D
T
E
I
T
T
K
N
E
I
F
S
L
S
L
C
G
--
P
M
A
A
Y
V
N
P
H
G
Y
I
H
E
T
L
T
V
YK
A
C
N
L
N
L
S
G
R
P
S
T
E
HSWFPG
Y
A
W
T
I
A
Q
C
R
I
C
G
NHM
G
W
K
F
T
A
TKKDMSPQKFWGLTRSALLPR
3
PsiBlast_PDB
57.48
23%
-67
- C3 -
-
1EGZ
-
GUNZ_DICD3
A:
[53-187]
-----------------
S
S
I
----
V
R
A
A
M
G
-
V
Q
E
S
G
G
Y
L
-
Q
D
P
A
G
N
----
K
A
K
V
E
R
V
V
D
A
-------------
A
I
A
N
-----
D
M
Y
A
----------
I
I
--
G
W
H
S
H
S
A
E
N
N
R
S
E
A
I
R
F
F
Q
--------
E
M
-
A
R
K
Y
G
N
K
P
N
V
--
I
--
Y
E
I
Y
N
---
E
P
L
Q
V
------
S
W
-----------------------------------
S
N
T
I
K
P
Y
A
E
A
---
V
I
S
A
I
R
A
I
-------------
D
P
D
N
L
I
I
V
G
T
P
S
W
S
Q
N
V
D
E
A
S
R
D
----
P
I
N
A
K
N
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
57.32
10%
-113
- C3 -
-
4I6U
3
?
A:
[7-77]
-----------------------------
F
L
L
S
K
V
S
F
V
I
K
K
I
R
L
E
K
----
G
M
T
Q
E
D
L
A
Y
K
S
N
----
L
D
R
T
F
I
S
G
I
E
R
-----
N
S
R
N
--
L
T
-------
I
--
K
S
L
E
L
I
M
K
G
L
E
V
S
D
V
V
F
F
E
--------
M
L
-
I
K
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
HHSearch
56.54
13%
-87
- C3 -
-
3F6W
1
?
A:
[10-79]
-----------------------------
A
R
Y
Q
A
L
L
D
L
L
L
E
A
R
S
A
A
----
G
I
T
Q
K
E
L
A
A
R
L
G
----
R
P
Q
S
F
V
S
K
T
E
N
-----
A
E
R
R
--
L
D
-------
V
--
I
E
F
M
D
F
C
R
G
I
G
T
D
P
Y
A
L
L
S
--------
K
L
-
E
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
55.92
15%
-
- C3 -
-
4MT7
-
ARHG9_RAT
A:
[45-381]
Q
N
R
D
Q
M
R
A
N
V
I
N
E
I
M
S
T
E
R
H
----
Y
I
K
H
L
K
D
I
C
E
G
--
Y
L
K
Q
C
R
K
R
R
DMFS
D
E
Q
L
K
V
I
F
G
N
I
E
D
I
Y
R
F
Q
M
G
F
V
R
D
L
E
K
Q
YNND
D
P
H
L
S
E
I
G
---
P
C
F
L
E
H
Q
D
G
F
W
I
Y
S
E
Y
C
N
N
H
L
D
A
C
M
E
L
S
K
L
M
K
D
S
R
Y
-
Q
H
F
F
E
A
C
R
L
L
Q
Q
M
I
D
I
A
I
D
G
F
L
L
T
P
V
Q
K
I
C
K
Y
P
L
Q
L
-----------------------------------
A
E
L
L
K
Y
T
A
Q
D
HSD
Y
R
Y
V
A
A
A
L
-------------
A
V
M
R
N
V
T
Q
Q
I
N
E
R
K
R
R
L
E
N
I
D
K
I
----
A
Q
W
Q
A
S
V
LDWEGD
D
I
L
D
RSSELI---
Y
T
G
E
M
A
W
I
Y
Q
P
Y
G
R
N
Q
Q
R
V
F
F
L
F
DH
Q
M
V
L
C
K
K
D
L
I
R
R
D
I
L
Y
Y
K
G
R
I
D
M
D
K
Y
E
V
I
D
I
E
D
G
R
D
D
D
F
N
V
S
M
K
N
A
F
K
L
H
N
K
E
T
---
E
E
V
H
L
F
F
A
K
K
L
E
E
----------
K
I
R
W
L
R
A
F
R
E
E
R
K
M
V
Q
E
D
E
K
I
G----------------
18
HHSearch
55.77
10%
-107
- C3 -
-
4IA8
-
?
B:
[6-76]
----------------------------
S
F
L
L
S
K
V
S
F
V
I
K
K
I
R
L
E
K
----
G
M
T
Q
E
D
L
A
Y
K
S
N
----
L
D
R
T
A
I
S
G
I
E
R
-----
N
S
R
N
L
--
T
-------
I
--
K
S
L
E
L
I
M
K
G
L
E
V
S
D
V
V
F
F
E
--------
M
L
-
I
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
55.64
16%
-85
- C3 -
-
2KPJ
-
?
A:
[6-74]
------------------------------
Q
K
A
I
F
S
E
N
L
N
S
Y
I
A
K
S
----
E
K
T
Q
L
E
I
A
K
S
I
G
----
V
S
P
Q
T
F
N
T
W
C
K
-----
G
I
A
I
--
P
R
-------
M
--
G
K
V
Q
A
L
A
D
Y
F
N
I
N
K
S
D
L
I
E
--------
D
K
-
K
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
54.79
14%
-109
- C3 -
-
1LLI
2
RPC1_LAMBD
B:
[16-79]
--------------------------------
R
R
L
K
A
I
Y
E
K
K
K
N
E
L
----
G
L
S
Q
E
S
L
A
D
K
L
G
----
M
G
Q
S
G
I
G
A
L
F
N
-----
G
I
N
A
--
L
N
-------
A
--
Y
N
A
A
L
L
A
K
I
L
K
V
S
V
E
E
F
S
P
--------
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
53.09
14%
-110
- C3 -
-
3KZ3
-
RPC1_LAMBD
B:
[11-79]
----------------------------
L
E
D
A
R
R
L
K
A
I
W
E
K
K
K
N
E
L
----
G
L
S
Y
E
S
V
A
D
K
M
G
----
M
G
Q
S
A
V
A
A
L
F
N
-----
G
I
N
A
--
L
N
-------
A
--
Y
N
A
A
L
L
A
K
I
L
K
V
S
V
E
E
F
S
P
--------
S
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
52.21
18%
-121
- C3 -
-
2GRM
-
?
A:
[1-67]
-------------------------------
M
F
K
I
G
S
V
L
K
Q
I
R
Q
E
L
----
N
Y
H
Q
I
D
L
Y
S
G
I
-----
M
S
K
S
V
Y
I
K
V
E
A
-----
D
S
R
P
I
S
---------
V
--
E
E
L
S
K
F
S
E
R
L
G
V
N
F
F
E
I
L
N
--------
R
A
-
G
M
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
HHSearch
52.13
10%
-120
- C3 -
-
2EF8
-
?
A:
[6-78]
-----------------------------
H
R
Y
R
C
L
V
Q
L
L
T
K
L
R
K
E
A
----
S
L
S
Q
S
E
L
A
I
F
L
G
----
L
S
Q
S
D
I
S
K
I
E
S
-----
F
E
R
R
--
L
D
---
A
L
E
L
F
--
E
L
L
E
V
V
A
S
R
L
G
L
P
M
D
I
L
L
K
--------
D
T
-
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
HHSearch
51.75
12%
-95
* C3 *
-
1Y7Y
-
?
A:
[7-73]
---------------------------
H
Y
A
D
L
V
K
F
G
Q
R
L
R
E
L
R
T
A
K
----
G
L
S
Q
E
T
L
A
F
L
S
G
----
L
D
R
S
Y
V
G
G
V
E
R
-----
G
Q
R
N
--
V
-------
S
L
--
V
N
I
L
K
L
A
T
A
L
D
I
E
P
R
E
L
F
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
50.18
19%
-64
- C3 -
-
2W69
-
PA_I75A3
A:
[7-203]
------
A
M
E
D
F
V
R
Q
C
F
N
P
M
I
----
V
E
L
A
E
K
A
M
K
E
Y
G
E
D
L
K
I
----
E
----
T
N
K
F
A
A
I
C
T
H
L
E
----
V
C
F
M
Y
S
D
F
--------------------
H
F
I
N
--
E
Q
G
E
S
I
V
V
E
L
D
-
D
P
N
A
L
K
H
--------
R
F
-
E
I
I
E
G
R
D
--------
R
T
M
A
W
---
T
V
V
N
S
I
C
N
T
T
G
A
E
-----------------------------------
K
P
K
F
----------
L
P
D
L
Y
D
Y
-------------
K
E
N
R
F
I
E
I
G
V
T
R
--
R
E
V
H
I
Y
Y
L
E
----
K
A
N
K
I
-----------------------------------------------------
K
S
T
H
I
H
I
F
S
F
T
G
E
E
M
A
T
K
A
D
Y
T
-------------
L
D
E
E
S
R
A
R
I
K
T
R
---
L
F
T
I
R
Q
E
M
A
N
R
G
L
----------
W
D
S
F
R
Q
S
E
R-----------------------------
21
HHSearch
49.48
12%
-61
- C3 -
-
1Y9Q
-
?
A:
[4-75]
--------------------------
T
D
V
M
F
K
S
Q
I
A
N
Q
L
K
N
L
R
K
S
R
----
G
L
S
L
D
A
T
A
Q
L
T
G
----
V
S
K
A
M
L
G
Q
I
E
R
-----
G
E
S
S
P
T
---------
I
--
A
T
L
W
K
I
A
S
G
L
E
A
S
F
S
A
F
F
A
--------
N
D
-
P
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
HHSearch
47.32
10%
-114
- C3 -
-
5UK3
-
?
I:
[22-83]
------------------------------------
N
Q
F
I
K
A
K
E
S
K
----
G
L
T
Y
Q
Q
M
A
Q
L
L
S
----
V
N
K
V
W
L
T
S
V
L
H
-----
G
Q
N
C
--
C
D
-------
I
--
Q
L
A
H
R
I
C
D
T
L
G
I
S
H
E
Y
A
N
E
--------
L
T
-
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
46.26
10%
-116
- C3 -
-
5UK3
-
?
D:
[22-83]
------------------------------------
N
Q
F
I
K
A
K
E
S
K
----
G
L
T
Y
Q
Q
M
A
Q
L
L
S
----
V
N
K
V
W
L
T
S
V
L
H
-----
G
Q
N
C
--
C
D
-------
I
--
Q
L
A
H
R
I
C
D
T
L
G
I
S
H
E
Y
A
N
E
--------
L
T
-
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------